Welcome to The Bioinformatics Lab

MSU Faculty of Bioengineering and Bioinformatics Research Lab

About the Lab

Under the current leadership of Prof. Andrei Mironov, the FBB MSU Bioinformatic Lab is currently commited to exploring new and inovative research areas within the topics of genomics and computation theory.


Bioinformatics is an interdisciplinary field that develops methods and software tools for understanding biological data. As an interdisciplinary field of science, bioinformatics combines biology, computer science, mathematics and statistics to analyze and interpret biological data.

Research & Projects

Currently the faculty members of the lab are conducting research in the following areas and are always looking for potential students and PhD researchers.

Research Areas

  • RNA-Chromatin Interactions

    ....

Tools & Services

RNA-Chrom database

A manually-curated analytical database of RNA–chromatin interactome.

Access Tool

OrthoQuantum

A web server that allows for time-efficient analysis and visualization of phylogenetic profiles of any set of eukaryotic proteins

Access Tool

Prot-DNA-Korr

A tool for studying sequence correlations between DNA-binding proteins and their binding sites. The program searches for correlated pairs of positions in alignments of proteins and their binding sites that may play a biological role in specific protein-nucleic acid binding.

Access Tool

SDPfox

A fast tool for the prediction of functional specificity groups and amino acid residues that determine specificity using MPA. It provides a novel phylogeny-independent method for prediction of specificity-determining positions (SDPs).

Access Tool

RNA Kinetics

Tool for RNA kinetics analysis

Access Tool

RNA Sequence Alignment

Server for multiple alignment of RNA sequences

Access Tool

Publications

Title Authors Date DOI
Comprehensive analysis of RNA-chromatin, RNA- and DNA-protein interactions Daniil Khlebnikov, Arina Nikolskaya, Anastasiya Zharikova, Andrey Mironov 2025-02-05 10.1093/nargab/lqaf010
BaRDIC: robust peak calling for RNA–DNA interaction data Dmitry E Mylarshchikov, Arina I Nikolskaya, Olesja D Bogomaz, Anastasia A Zharikova, Andrey A Mironov 2024-06 10.1093/nargab/lqae054
OrthoQuantum: visualizing evolutionary repertoire of eukaryotic proteins Ivan S Ilnitskiy, Anastasia A Zharikova, Andrey A Mironov 2022-07-05 10.1093/nar/gkac385
HiMoRNA and RNA-Chrom integration: Chromatin-Associated LncRNAs in Genome-Wide Epigenetic Regulation Ivan S. Ilnitskiy, Grigory K. Ryabykh, Daria A. Marakulina, Andrey A. Mironov, Yulia A. Medvedeva 2024-05-05 10.1101/2024.05.02.592208
RNA-Chrom: a manually curated analytical database of RNA–chromatin interactome Grigory Ryabykh, S V Kuznetsov, Y D Korostelev, A I Sigorskikh, A A Zharikova, A A Mironov 2023-07-06 10.1093/database/baad025
Expression of SARS-CoV-2 entry factors in lung epithelial stem cells and its potential implications for COVID-19 Valyaeva, A.A., Zharikova, A.A., Kasianov, A.S. et al. 2020 10.1038/s41598-020-74598-5

Faculty Members


  • Anastasia Zharikova

    About

    My research interests are ...

PhD Students


  • Ivan Ilnitskiy

    About


  • Grigoriy Ryabykh

    About


Alumni


Dmitriy Mylarshikov

Contact us

Ivan Ilnitskiy


Email: nfsus96@gmail.com