SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q8UK99_AGRT5/3-102, pdb ID: 1vqy. SDPsite predicts following important positions (numbering corresponds to 1vqy):

  • SDPs:

    90S, 55W

  • CPs:

    76W, 8Y, 46G, 55W, 39G, 63R

  • Best cluster:

    8Y, 39G, 55W, 63R, 76W, 90S

  • Second best cluster:

  • Mapping predictions onto structure of 1vqy:

  • Associated grouping:

    • Group 1

      • Q7ZWJ6_BRARE/154-253
      • Q6DJ76_XENTR/154-253
      • Q9D9L2_MOUSE/35-134
      • NPS3B_MOUSE/37-136
      • NPS3B_HUMAN/146-245
    • Group 2

      • Q89P26_BRAJA/107-202
      • Q8GHL5_PSERE/107-204
      • NPS3B_HUMAN/146-245
      • Q6DJ76_XENTR/154-253
      • Q7ZWJ6_BRARE/154-253
      • Q7SGJ2_NEUCR/172-269
      • Q6C7U3_YARLI/393-490
      • Q9PU59_BRARE/177-274
      • Q7PGV6_ANOGA/156-253
      • YMQ1_CAEEL/190-287
      • NIPS1_MOUSE/185-282
      • NIPS2_MOUSE/182-279
    • Group 3

      • Q89J32_BRAJA/5-107
      • Q9AH04_RHOER/3-100
      • Q98IN9_RHILO/48-151
      • Q89KU9_BRAJA/3-106
      • Q6N5T9_RHOPA/71-174