SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: POP3_ARATH/8-104, pdb ID: 1q4r. SDPsite predicts following important positions (numbering corresponds to 1q4r):

  • SDPs:

    67F

  • CPs:

    13H, 80Y, 104D, 86H

  • Best cluster:

    13H, 67F, 80Y, 86H, 104D

  • Second best cluster:

  • Mapping predictions onto structure of 1q4r:

  • Associated grouping:

    • Group 1

      • Q740A8_MYCPA/82-179
      • O80887_ARATH/57-152
      • Q7SEW8_NEUCR/10-117
      • Q9F304_STRCO/2-93
      • Q82QQ6_STRAW/2-93
      • Q9FDL1_ZYMMO/42-154
      • Q7S333_NEUCR/57-160
      • Q7S418_NEUCR/3-107
      • Q7URH4_RHOBA/33-129
      • Q6J6I3_ENTCL/2-99
      • Q84FK9_9ENTR/2-99
      • Q9FK81_ARATH/6-100
      • O31026_VIBCH/2-98
      • Q6LGQ4_PHOPR/2-98
      • Q7W8L7_BORPA/4-98
      • Q7WCF6_BORPA/2-96
      • Q8UHA6_AGRT5/2-102
      • Q98H26_RHILO/2-102
      • POP3_ARATH/8-104
      • Q7XBH1_ORYSA/11-107
      • Q41049_9ROSI/9-107
      • Q42482_9ROSI/16-112
    • Group 2

      • Q7UFZ5_RHOBA/16-113
      • Q6PWS2_9GAMM/35-133
      • Q9A628_CAUCR/2-100
      • Q98BN1_RHILO/2-96
      • Y4036_STRCO/2-97
      • Q7N2N7_PHOLL/12-107
      • Q27103_TRYVI/1-105
      • Q9ZA13_PSEHY/291-383
      • Q93NG5_ARTNI/9-103
      • Q6YTX5_ORYSA/40-141
      • Q9SIP1_ARATH/49-144
      • Q9SYD8_ARATH/5-102
      • Q9AMS9_BRAJA/2-94
      • Q8UGT2_AGRT5/2-93
      • Q8G2X5_BRUSU/2-94
      • O80887_ARATH/57-152
      • Q6YTX5_ORYSA/40-141
      • Q8RF81_FUSNN/2-98
      • Q9SIP1_ARATH/49-144
      • Q9SYD8_ARATH/5-102
      • Q748N1_GEOSL/2-96
      • Q97LN9_CLOAB/2-94
      • Q8ABC5_BACTN/2-99
      • Q7MWG5_PORGI/2-100
      • Q6LYV0_METMP/2-100
      • Q8XM37_CLOPE/2-100
      • Q726I9_DESVH/2-101
      • Q89RS9_BRAJA/5-102
      • Q8KCZ4_CHLTE/2-100