SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: YECM_ECOLI/5-185, pdb ID: 1k4n. SDPsite predicts following important positions (numbering corresponds to 1k4n):

  • SDPs:

    60W, 126P, 168V, 83L, 180W, 71L, 124G, 169T, 148S, 177F, 62R, 12D, 82C, 29D, 10S, 171G, 170D, 66Q, 137L, 58E, 40T, 36G, 130N, 130N, 74N, 74N, 70L, 21L, 106G, 106G, 106G, 63G, 151T, 47I, 38N

  • CPs:

    115W, 46H, 117H, 178H, 89P, 103P, 105P, 110Y, 111P, 123P, 154P, 164P

  • Best cluster:

    46H, 47I, 58E, 60W, 62R, 63G, 70L, 71L, 82C, 83L, 103P, 105P, 106G, 110Y, 111P, 115W, 117H, 168V, 169T, 170D, 171G, 177F, 178H

  • Second best cluster:

    123P, 124G

  • Mapping predictions onto structure of 1k4n:

  • Associated grouping:

    • Group 1

      • YECM_ECOLI/5-185
      • Q8ZEV6_YERPE/5-183
      • YECM_HAEIN/3-188
      • Q9CN85_PASMU/24-211
    • Group 2

      • Q8EF20_SHEON/8-196
      • Q8DFR2_VIBVU/7-196
      • Q9KQC7_VIBCH/7-196