SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: ENGD_HAEIN/278-361, pdb ID: 1jal. SDPsite predicts following important positions (numbering corresponds to 1jal):

  • SDPs:

    357M, 338E, 351V, 332G, 307V, 318R, 282Y, 288K, 295V, 321V, 322I, 302P, 329Q, 347K, 324Y, 353D, 325E

  • CPs:

    293W, 309H, 353Y, 286G, 311D, 316F, 350G, 359D, 344G, 363F

  • Best cluster:

    282Y, 293W, 295V, 302P, 307V, 316F, 318R, 321V, 322I, 324Y, 325E, 347K, 350G, 351V, 353D, 357M, 359D

  • Second best cluster:

    309H, 311D

  • Mapping predictions onto structure of 1jal:

  • Associated grouping:

    • Group 1

      • Q8SRN9_ENCCU/277-360
      • Q8IBM9_PLAF7/303-386
      • Q9M7P3_CAPAN/304-387
      • O13998_SCHPO/307-390
      • YBN5_YEAST/307-390
      • YCHF_CAEEL/302-385
      • Q8SWU7_DROME/303-386
    • Group 2

      • Q8RDX8_FUSNN/280-363
      • O25293_HELPY/282-365
      • Q9PP03_CAMJE/283-366
      • ENGD_HAEIN/278-361
      • Q8PC60_XANCP/279-362
      • Q8XF19_SALTI/279-362
      • Q9AAW3_CAUCR/282-365
    • Group 3

      • O51251_BORBU/284-367
      • O83161_TREPA/284-367
      • Q97TD2_STRPN/287-370
      • Q9X4F2_RHOSH/285-368
      • P73886_SYNY3/279-362
      • Q8UD94_AGRT5/283-366
      • Q98HV5_RHILO/283-366
      • Q8DIJ8_SYNEL/279-362
      • Q9AY71_ORYSA/347-430
      • Q8EKV3_OCEIH/282-365
      • ENGD_BACSU/282-365
      • Q8CMP8_STAEP/281-364
      • Q926X1_LISMO/282-365
    • Group 4

      • Q9ZCV5_RICPR/281-364
      • Q8RLE1_MYCGA/283-366
      • Q98R45_MYCPU/285-368
      • Q9PPP4_UREPA/282-365
      • Y024_MYCGE/282-365
      • Q8EU98_MYCPE/281-364
    • Group 5

      • Q93KY4_STRVR/278-361
      • O66865_AQUAE/286-369
      • O53459_MYCTU/273-356
      • Q8G5S7_BIFLO/277-361
      • Q8XJ95_CLOPE/281-364
      • Q8R9F4_THETN/279-362
    • Group 6

      • Q8D2K3_WIGBR/273-356
      • ENGD_BUCAP/277-360
      • ENGD_BUCAI/277-360