SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q9X0J6_THEMA/13-86, pdb ID: 1lkn. SDPsite predicts following important positions (numbering corresponds to 1lkn):

  • SDPs:

    22P, 74C, 42Y, 21W, 62K, 80E, 19E, 81P, 45E, 47K, 16L, 51T, 27E, 70K, 72L, 33W, 14K

  • CPs:

    46G, 24W, 86Y, 63G, 76W, 39E, 84K

  • Best cluster:

    21W, 22P, 24W, 42Y, 45E, 46G, 47K, 62K, 63G, 80E, 81P, 84K, 86Y

  • Second best cluster:

    33W, 39E, 51T, 70K, 72L, 74C, 76W

  • Mapping predictions onto structure of 1lkn:

  • Associated grouping:

    • Group 1

      • O48852_ARATH/57-136
      • Q9AV85_ORYSA/4-88
      • Q9SV93_ARATH/59-136
      • Q8LEK1_ARATH/59-133
      • Q8YWA1_ANASP/14-87
      • Q9X0J6_THEMA/13-86
      • Q8LAH4_ARATH/19-102
      • Q9M8Y6_ARATH/14-88
    • Group 2

      • Q9I2I7_PSEAE/38-111
      • Q98FW1_RHILO/39-112
      • Q9I081_PSEAE/38-111
      • Q9KZG3_STRCO/97-169
      • Q98HB3_RHILO/42-116
      • Q9HYI0_PSEAE/36-109
      • Q8UAH4_AGRT5/39-113
      • Q98EL1_RHILO/40-113
      • Q9HTP0_PSEAE/40-113
      • O69827_STRCO/44-117
      • Q982W1_RHILO/37-110
      • Q987H8_RHILO/48-122
      • Q92Y73_RHIME/39-113
      • Q98EK9_RHILO/38-111
      • Q98EL0_RHILO/37-110
      • Q8UFZ1_AGRT5/36-109
      • Q92QQ8_RHIME/36-109
    • Group 3

      • YLBA_ECOLI/55-136
      • Q9RV77_DEIRA/44-121
      • Q8UB12_AGRT5/53-136
      • Q8G2H6_BRUSU/61-144