SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q9I747_PSEAE/4-137, pdb ID: 1y12. SDPsite predicts following important positions (numbering corresponds to 1y12):

  • SDPs:

    136Y, 32W, 68N, 98L, 87R, 18D, 49G, 12V

  • CPs:

    14G, 21H, 129F, 63D, 97Y, 6F, 92E

  • Best cluster:

    68N, 18D, 21H, 87R, 97Y, 98L

  • Second best cluster:

    12V, 14G, 63D, 68N

  • Mapping predictions onto structure of 1y12:

  • Associated grouping:

    • Group 1

      • Q8U7V4_AGRT5/2-134
      • O52405_EDWIC/4-138
      • Q8ZIJ6_YERPE/6-148
      • Q8ZCP1_YERPE/4-137
      • Q93IS5_SALTI/4-137
      • Q8PF41_XANAC/4-142
      • Q9I747_PSEAE/4-137
    • Group 2

      • Q8Z0X8_SALTI/31-157
      • Q8Z3S0_SALTI/3-136
      • Q9I1B2_PSEAE/1-140
    • Group 3

      • Q8XGB3_YERPE/4-147
      • Q8ZCM0_YERPE/6-146
      • Q8X7X3_ECO57/4-144
      • YHHZ_ECOLI/4-140
      • Q9HI36_PSEAE/4-156
      • Q938W4_VIBPA/4-156
      • P72350_VIBCH/4-156
      • Q8ZD06_YERPE/4-144
      • Q8ZCU5_YERPE/4-144
      • O52671_ECOLI/4-156
      • Q8ZAT2_YERPE/4-156