SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Y882_METJA/25-193, pdb ID: 1dus. SDPsite predicts following important positions (numbering corresponds to 1dus):

  • SDPs:

    66Y, 165G, 163K, 139L, 190R, 85I, 140H, 136K, 173M

  • CPs:

    138P, 137P, 69G, 71G, 136N, 175G, 65D, 35F

  • Best cluster:

    136K, 137P, 138P, 139L, 140H

  • Second best cluster:

    163K, 165G, 190R

  • Mapping predictions onto structure of 1dus:

  • Associated grouping:

    • Group 1

      • RSMC_ECOLI/165-332
      • Q7MZN0_PHOLL/166-333
      • RSMC_BUCAP/165-332
      • RSMC_BUCAI/167-334
    • Group 2

      • Q87LY1_VIBPA/171-337
      • Q887Y4_PSESM/161-328
      • Q6FE96_ACIAD/164-334
      • Q9KUA0_VIBCH/171-337
      • Q6LUS5_PHOPR/170-336
    • Group 3

      • Y882_METJA/25-193
      • Q8TXG5_METKA/27-196
      • Q7A2X0_STAAM/26-198
      • O59359_PYRHO/29-195
      • Q9X1Z2_THEMA/31-197
      • Q88YQ2_LACPL/27-197
      • Q74L05_LACJO/30-199
      • Q8DQC6_STRR6/27-192
      • Q81J49_BACCR/27-195
    • Group 4

      • Q9K3L9_STRCO/232-403
      • Q87WA9_PSESM/200-371
      • Q87MA4_VIBPA/199-373
      • RSMD_ECOLI/198-370
    • Group 5

      • Q9A789_CAUCR/135-299
      • Q8P4R8_XANCP/175-346
      • Q7D284_AGRT5/158-330
      • Q98BI2_RHILO/165-333
      • Q8FXS8_BRUSU/166-337
      • Q6G0P8_BARQU/169-339