SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q9HTW3_PSEAE/7-104, pdb ID: 1t3u. SDPsite predicts following important positions (numbering corresponds to 1t3u):

  • SDPs:

    21P, 31A, 94A, 57M, 35L

  • CPs:

    11I, 9V, 61N, 28L, 66L, 36D, 60L, 59A, 32A, 7L

  • Best cluster:

    31A, 32A, 35L, 36D, 59A, 60L, 61N

  • Second best cluster:

    7L, 94A, 11I, 28L

  • Mapping predictions onto structure of 1t3u:

  • Associated grouping:

    • Group 1

      • Y756_RICPR/4-105
      • Q98FJ6_RHILO/4-120
      • Q9A3F7_CAUCR/4-108
    • Group 2

      • Q9JRG6_NEIMA/6-101
      • YGFE_ECOLI/6-109
      • Q9KP95_VIBCH/6-102
      • YGFE_HAEIN/6-100
      • Q9CKA3_PASMU/6-100
    • Group 3

      • Q99UW4_STAAM/8-88
      • P94542_BACSU/9-85
      • Q97GL1_CLOAB/4-100
      • Q9K897_BACHD/11-91