SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: Q9X1S1_THEMA/304-410, pdb ID: 1o0u. SDPsite predicts following important positions (numbering corresponds to 1o0u):

  • SDPs:

    409N, 398L, 391A, 376G, 349G, 373K, 403P, 394K, 356P, 313T, 374A, 338E, 343V, 318K, 332S, 329L, 336A, 325R, 357T

  • CPs:

    310G, 311G, 323G, 324G, 351D, 352G, 354D, 355G, 361G, 402G

  • Best cluster:

    323G, 324G, 325R, 349G, 351D, 352G, 354D, 355G, 356P, 357T, 402G, 403P

  • Second best cluster:

    310G, 311G, 313T, 329L, 332S, 336A, 338E, 361G, 373K, 374A, 376G, 391A, 394K, 398L

  • Mapping predictions onto structure of 1o0u:

  • Associated grouping:

    • Group 1

      • Q9BE01_MACFA/274-387
      • YQ42_CAEEL/277-388
      • Q9VQC4_DROME/366-480
    • Group 2

      • O58231_PYRHO/321-427
      • Q9X1S1_THEMA/304-410
      • Q9YDB7_AERPE/274-383
      • O05116_METEX/320-430
      • Q98CH7_RHILO/308-414
      • Q9I3L3_PSEAE/306-412
      • TTUD3_AGRVI/270-378
      • TTUD4_AGRVI/323-431
    • Group 3

      • Q9UX56_SULSO/290-393
      • Q97AL3_THEVO/311-411
      • Q9HKZ0_THEAC/288-388