SDPsite: prediction of protein active and specific recognition sites from sequence and structure

Home & Submit job
Algorithm & 
Format requirements
Contact us
Gallery of examples


This family contains a protein with resolved 3D structure: Q9I3Z5_PSEAE/1-116, pdb ID: 1s7i. SDPsite predicts following important positions (numbering corresponds to 1s7i):

  • SDPs:

    14Y, 101I, 60A, 10L, 105I, 34E, 49I, 104K, 9Y, 9Y, 9Y, 12L, 62T, 11C, 51S, 31I, 20L, 88Y, 56S, 53A, 63L, 35C

  • CPs:

    76P, 46G, 74D, 75G, 86G, 9Y, 7M, 82E, 114E, 116R

  • Best cluster:

    9Y, 101I, 11C, 12L, 14Y, 31I, 34E, 35C, 51S, 53A, 86G, 88Y, 101I, 104K, 105I, 114E, 116R

  • Second best cluster:

    60A, 62T, 63L, 74D, 75G, 76P

  • Mapping predictions onto structure of 1s7i:

  • Associated grouping:

    • Group 1

      • Q98HH2_RHILO/1-124
      • Q98H82_RHILO/1-124
      • Q98EG6_RHILO/1-118
      • Q9I3Z5_PSEAE/1-116
      • Q984U5_RHILO/1-121
    • Group 2

      • Q98DP4_RHILO/1-122
      • Q9I3Z0_PSEAE/1-141
      • Q98I36_RHILO/1-134