SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Y1548_ARCFU/1-102, pdb ID: 1y88. SDPsite predicts following important positions (numbering corresponds to 1y88):

  • SDPs:

    59V, 43R, 47R, 28V, 51E, 56-, 29Q, 84P, 58P, 50I, 104G, 99Y, 66A, 101G, 102C, 31N, 14L, 61T, 112Y, 86I, 11M, 52C

  • CPs:

    53K, 88T

  • Best cluster:

    50I, 51E, 52C, 53K, 61T, 66A, 84P, 86I, 88T, 99Y, 101G, 102C, 104G

  • Second best cluster:

    58P, 59V

  • Mapping predictions onto structure of 1y88:

  • Associated grouping:

    • Group 1

      • Q9HHJ0_HALN1/1-110
      • Y1548_ARCFU/1-102
      • Q9X030_THEMA/47-133
      • O27483_METTH/13-114
      • O83484_TREPA/359-463
      • O83885_TREPA/336-438
    • Group 2

      • Q9ZLG8_HELPJ/46-144
      • Y4CE_RHISN/103-212
      • Q99UG7_STAAM/17-116
      • Y4CE_RHISN/103-212
      • O06957_9ZZZZ/74-170
      • Q9FCF7_STRCO/421-521
      • Q9L161_STRCO/136-236
      • Q9EWM6_STRCO/105-208
      • Q9RT88_DEIRA/117-215
      • P95025_MYCTU/172-278
      • Q9RX07_DEIRA/195-310
      • MRR_ECOLI/175-279
      • Q9KR83_VIBCH/812-917
      • O27278_METTH/209-312
      • Q9RWS8_DEIRA/173-278
      • Q9KFI0_BACHD/60-158
      • O25712_HELPY/88-183
      • P73936_SYNY3/201-296