SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: Y1034_HAEIN/1-162, pdb ID: 1in0. SDPsite predicts following important positions (numbering corresponds to 1in0):

  • SDPs:

    77S, 70I, 39I, 122Q, 55D, 15V, 2P, 1M, 19V, 159N, 111T, 21N, 75E, 87H, 16R, 106M, 20E, 53E, 66I, 153G, 57Q, 37A, 33R, 33R, 112K, 112K, 112K, 92Y, 62I, 6I, 38V

  • CPs:

    4F, 5D, 17N, 31D, 89G, 138D, 139D, 160N, 158F, 63E, 14E, 29R, 72R, 108K, 109K, 120K, 131R, 135K

  • Best cluster:

    14E, 15V, 16R, 17N, 19V, 20E, 21N

  • Second best cluster:

    4F, 55D, 66I, 108K, 109K, 111T, 112K, 131R, 158F, 159N, 160N

  • Mapping predictions onto structure of 1in0:

  • Associated grouping:

    • Group 1

      • YAJQ_ECOLI/7-168
      • Y4395_PSEAE/1-158
      • Y1508_VIBCH/1-159
    • Group 2

      • YITK_BACSU/4-163
      • Y2387_BACHD/4-164
      • Y4614_STRCO/3-162
      • Y581_MYCBO/3-163