SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q97S59_STRPN/6-85, pdb ID: 1g2r. SDPsite predicts following important positions (numbering corresponds to 1g2r):

  • SDPs:

    81L, 65F, 42A, 34V, 68S, 61K, 53N, 51L, 16E, 17V, 66N, 39T, 14S, 13V, 15N, 50K, 78Y, 36I

  • CPs:

    11S, 51Y, 9R, 25R, 48R

  • Best cluster:

    9R, 11S, 14S, 50K, 53N, 65F, 78Y, 81L

  • Second best cluster:

    15N, 16E, 17V

  • Mapping predictions onto structure of 1g2r:

  • Associated grouping:

    • Group 1

      • Q97I53_CLOAB/6-85
      • Q99UK5_STAAM/6-87
      • Q9KA75_BACHD/6-85
      • YLXR_BACSU/7-86
      • Q97S59_STRPN/6-85
      • Q9CHG6_LACLA/6-85
      • Q9PQH2_UREPA/5-79
      • Q98R06_MYCPU/12-92
    • Group 2

      • Q56426_THETH/4-84
      • Q9KYR0_STRCO/10-90
      • P71612_MYCTU/1-84
      • Q9APM9_MYXXA/18-98
      • Q9RTG6_DEIRA/24-103
      • Q9AC24_CAUCR/14-95
      • Q98BI9_RHILO/1-82
      • Q9PIZ2_CAMJE/5-82
      • Q9ZM47_HELPJ/11-89