SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: Q9X1H5_THEMA/1-282, pdb ID: 1vkm. SDPsite predicts following important positions (numbering corresponds to 1vkm):

  • SDPs:

    217V, 228I, 158M

  • CPs:

    23H, 121H, 26P, 175P, 216P, 246P, 24G, 45G, 56G, 61G, 108G, 116G, 118G, 119G, 126D, 130D, 145G, 151D, 177F, 258G

  • Best cluster:

    23H, 246P, 116G, 118G, 119G, 121H, 126D, 130D, 145G, 151D, 175P, 177F, 216P, 217V, 246P

  • Second best cluster:

    26P, 228I, 258G

  • Mapping predictions onto structure of 1vkm:

  • Associated grouping:

    • Group 1

      • Q9C6Q2_ARATH/35-358
      • Q9L393_ERWCH/15-306
      • Q22721_CAEEL/20-312
      • Q9VPR3_DROME/32-327
      • Q99WR4_STAAM/12-303
      • YEIN_ECOLI/15-307
    • Group 2

      • Q9RS16_DEIRA/18-309
      • Q9USY1_SCHPO/45-339
      • Q98NQ8_RHILO/14-305