SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: YBDK_ECOLI/12-292, pdb ID: 1r8g. SDPsite predicts following important positions (numbering corresponds to 1r8g):

  • SDPs:

    219S, 278L, 252N, 57S, 258Q, 157F, 244P, 212S, 138H, 237E, 186F, 105W, 247L, 215T, 190P, 242D, 54I, 134G, 65V, 253M, 55T, 165S, 241M, 284R, 289R, 227I, 276D, 97G, 45I, 279L, 291G, 233F, 136H, 255G, 62A, 175D, 119T, 232H, 261A

  • CPs:

    169P, 173G, 159P, 101P, 60E, 182R, 91H, 163A, 168S, 98G, 17E, 166A, 237E, 180S, 186F

  • Best cluster:

    175D, 54I, 55T, 57S, 62A, 97G, 98G, 134G, 136H, 138H, 157F, 165S, 166A, 168S, 180S, 182R, 227I, 242D, 244P, 247L, 252N, 255G, 258Q, 284R, 289R, 291G

  • Second best cluster:

    278L, 279L

  • Mapping predictions onto structure of 1r8g:

  • Associated grouping:

    • Group 1

      • Q9I1T4_PSEAE/11-290
      • Q9HPZ9_HALN1/13-298
      • YBDK_ECOLI/12-292
      • Y441_MYCBO/18-297
    • Group 2

      • O69672_MYCTU/44-355
      • Q9RD01_STRCO/35-342
      • Q9A2Z2_CAUCR/48-358
      • Q9JMV4_BRAJA/22-335
      • Q9RH09_ZYMMO/51-361