SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q9HXX5_PSEAE/6-115, pdb ID: 1rw1. SDPsite predicts following important positions (numbering corresponds to 1rw1):

  • SDPs:

    57N, 110Y, 105F, 8I, 7G, 106K, 32D, 14M, 13T

  • CPs:

    11C, 93P, 92R, 104G, 87P, 94V, 89M, 66L, 43L, 90I

  • Best cluster:

    7G, 8I, 13T, 32D, 57N, 90I, 92R, 93P, 94V, 104G, 105F, 106K, 110Y

  • Second best cluster:

    43L, 66L, 87P

  • Mapping predictions onto structure of 1rw1:

  • Associated grouping:

    • Group 1

      • Q9CD46_MYCLE/1-104
      • ARSC_HAEIN/6-116
      • Q9CLS9_PASMU/6-116
      • Q9KQ39_VIBCH/6-116
      • Q9A861_CAUCR/11-121
      • YFGD_ECOLI/8-119
      • ARSC_NEIMB/7-117
      • Q9I508_PSEAE/7-117
      • ARSC_ECOLI/7-117
      • Q98J03_RHILO/6-116
      • Q9A083_STRPY/7-117
      • Q9CJQ0_PASMU/6-116
    • Group 2

      • Q9CHE4_LACLA/5-116
      • Q9PPJ0_CAMJE/4-109
      • YUSI_BACSU/6-118
      • Q9K785_BACHD/6-118
      • Q9JZ90_NEIMB/5-116
      • Q9PH31_XYLFA/11-122
      • YFFB_HAEIN/5-114
      • Q9CM21_PASMU/5-114
      • Q986E7_RHILO/6-115
      • YFFB_ECOLI/5-116
      • Q9KQ54_VIBCH/22-131
      • Q9A7S8_CAUCR/22-131
      • Q9HXX5_PSEAE/6-115
    • Group 3

      • YQGZ_BACSU/8-118
      • Y176_UREPA/5-122
      • Y127_MYCPN/16-132
      • Y127_MYCGE/17-133
      • Q9CFZ8_LACLA/8-121
      • Q9CGN5_LACLA/5-115
      • Q9CFY7_LACLA/5-117
      • Q9CH93_LACLA/5-115
      • Q99XP2_STRPY/5-115
      • SPX_LACLC/5-115
      • SPX_STRPY/5-115
      • SPX1_LACLA/5-115
      • SPX_BACSU/5-115
      • SPX_BACHD/5-115