SDPsite: prediction of protein active and specific recognition sites from sequence and structure

Home & Submit job
Algorithm & 
Format requirements
Contact us
Gallery of examples


This family contains a protein with resolved 3D structure: YACG_ECOLI/5-64, pdb ID: 1lv3. SDPsite predicts following important positions (numbering corresponds to 1lv3):

  • SDPs:

    48P, 44E

  • CPs:

    40W, 9C, 12C, 28C

  • Best cluster:

    9C, 12C, 28C, 40W, 44E

  • Second best cluster:

  • Mapping predictions onto structure of 1lv3:

  • Associated grouping:

    • Group 1

      • Y4530_PSEAE/5-64
      • Y2429_VIBCH/5-65
      • YACG_ECOLI/5-64
      • Y891_HAEIN/2-61
      • Y089_PASMU/6-65
    • Group 2

      • Y330_NEIMB/5-69
      • Y2340_CAUCR/1-57
      • Y6451_RHILO/10-65