SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: YNU0_YEAST/24-202, pdb ID: 1jzt. SDPsite predicts following important positions (numbering corresponds to 1jzt):

  • SDPs:

    144S, 88P, 200V, 143F, 196V, 178W, 34L, 190I, 195L

  • CPs:

    175P, 66G, 173D, 138D, 142G, 73D, 68G, 70N, 72G, 177G

  • Best cluster:

    66G, 68G, 70N, 72G, 73D, 138D, 142G, 143F, 144S, 173D, 175P, 177G, 178W, 195L, 196V

  • Second best cluster:

    34L, 200V

  • Mapping predictions onto structure of 1jzt:

  • Associated grouping:

    • Group 1

      • Q9XW15_CAEEL/142-305
      • YNU0_YEAST/24-202
      • YDO5_SCHPO/22-193
      • Q9LTX3_ARATH/92-267
      • Q9W2Y3_DROME/67-233
    • Group 2

      • Q9X024_THEMA/12-178
      • O67377_AQUAE/20-182
      • Q9PIU1_CAMJE/18-178
      • YD63_HELPJ/19-179
      • Q97LR4_CLOAB/20-190
      • Y1433_SYNY3/27-191
      • Q9HI91_THEAC/13-167
      • Q97CH2_THEVO/37-191
      • Q9RU65_DEIRA/1-158
      • Q97WG6_SULSO/17-187
      • Q9Y9C5_AERPE/42-213
      • Q9X3W3_ZYMMO/42-199
      • O86783_STRCO/21-191
      • Y373_MYCLE/21-182
      • O29407_ARCFU/19-177
      • O59623_PYRHO/19-187
      • Y1586_METJA/45-211
      • Q9KMX5_VIBCH/28-193
      • Q9PFC1_XYLFA/1-165
      • Q9HUL5_PSEAE/30-194
      • Q9A6W7_CAUCR/23-180
      • Q98N17_RHILO/23-183
      • Q9HQ90_HALN1/11-178
      • O27324_METTH/35-208
      • Q9N9A0_LEIMA/40-209
      • YJEF_ECOLI/34-199