SDPsite: prediction of protein active and specific recognition sites from sequence and structure

Home & Submit job
Algorithm & 
Format requirements
Contact us
Gallery of examples

##FAMILY##

This family contains a protein with resolved 3D structure: COCH_HUMAN/32-121, pdb ID: 1jbi. SDPsite predicts following important positions (numbering corresponds to 1jbi):

  • SDPs:

    88L, 47I, 22V, 34S, 59N, 68S, 19K, 12G, 29P, 71G, 51A, 14D, 18E, 30L, 57I, 69L, 89S, 93A, 39I, 90R, 26G

  • CPs:

    28C, 48C, 24C, 8C, 53H, 25P

  • Best cluster:

    88L, 24C, 25P, 26G, 28C, 29P, 47I, 48C, 51A, 57I, 59N

  • Second best cluster:

    18E, 19K, 68S, 69L, 71G, 88L, 89S, 90R, 93A

  • Mapping predictions onto structure of 1jbi:

  • Associated grouping:

    • Group 1

      • Q8I7Z6_TOXGO/1142-1236
      • Q8I7Z6_TOXGO/1142-1236
      • Q8IM24_PLAF7/1171-1264
      • Q8I7Z6_TOXGO/1142-1236
      • DCBD1_MOUSE/147-239
      • Q8WQJ3_PLACH/412-509
      • Q8IM24_PLAF7/1171-1264
      • Q8WT63_PLABE/1204-1297
      • Q8IM24_PLAF7/1171-1264
      • Q14089_HUMAN/117-217
      • DCBD2_HUMAN/193-285
    • Group 2

      • Q8T9S1_TACTR/329-421
      • Q8VHI5_MOUSE/44-133
      • Q8T5Z6_PLABE/728-826
      • Q8IKS0_PLAF7/726-824
      • O61139_CRYPV/740-837
      • Q8IK83_PLAF7/754-852
      • Q8AW56_BRARE/31-120
      • Q8WQJ3_PLACH/412-509
      • Q8I7Z6_TOXGO/1142-1236
      • Q8BZQ2_MOUSE/387-486
      • Q8CGD2_MOUSE/394-492
      • Q8BZQ2_MOUSE/387-486
      • Q8CGD2_MOUSE/394-492
      • COCH_CHICK/28-117
      • COCH_HUMAN/32-121