SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: RRAA1_VIBCH/1-153, pdb ID: 1vi4. SDPsite predicts following important positions (numbering corresponds to 1vi4):

  • SDPs:

    109G, 88W, 65D, 33F, 46N, 6T, 74L, 147A, 80A, 113L, 153L, 69S, 17V, 53L, 86N, 79L, 57G, 89E, 108L, 134M, 77D, 94Y, 19L, 122K, 26N, 67H, 31S, 116S, 135Q, 16Q, 111K, 34W, 37I, 30R, 139V

  • CPs:

    36G, 91G, 96G, 149D, 152G, 142P, 144D, 40T, 99R

  • Best cluster:

    26N, 30R, 31S, 33F, 34W, 36G, 37I, 53L, 57G, 79L, 80A, 86N, 88W, 89E, 91G, 108L, 109G, 111K, 147A, 149D, 152G, 153L

  • Second best cluster:

    65D, 67H, 69S, 74L, 94Y, 96G

  • Mapping predictions onto structure of 1vi4:

  • Associated grouping:

    • Group 1

      • RRAA_DEIRA/3-154
      • RRAA_MYCTU/4-156
      • RRAA1_VIBCH/1-153
      • RRAA_PSEAE/1-153
      • RRAA_HAEIN/1-153
      • RRAA2_VIBCH/1-153
    • Group 2

      • Y644_METJA/17-168
      • YEK0_YEAST/12-184
      • O26974_METTH/26-179