SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: Y828_PYRHO/17-116, pdb ID: 1v30. SDPsite predicts following important positions (numbering corresponds to 1v30):

  • SDPs:

    31F, 47L

  • CPs:

    48P, 62Y, 60E, 65D, 73N, 96W

  • Best cluster:

    47L, 48P

  • Second best cluster:

    31F, 60E, 62Y, 65D, 73N, 96W

  • Mapping predictions onto structure of 1v30:

  • Associated grouping:

    • Group 1

      • Y1612_BACHD/1-104
      • YKQA_BACSU/12-119
      • YTFP_ECOLI/10-112
      • Y2546_VIBCH/12-115
    • Group 2

      • Y828_PYRHO/17-116
      • Y1514_METJA/11-119
      • TINA1_DROME/21-140
      • YS11_DROME/18-136