SDPsite: prediction of protein active and specific recognition sites from sequence and structure

Home & Submit job
Algorithm & 
Format requirements
Contact us
Gallery of examples


This family contains a protein with resolved 3D structure: RUVX_ECOLI/3-136, pdb ID: 1nmn. SDPsite predicts following important positions (numbering corresponds to 1nmn):

  • SDPs:

    8F, 70Q, 20G, 73T, 42W, 112G, 54P, 28R, 81N, 24T, 10F, 59V, 113Y, 133Y, 64N, 72L, 136Q, 104R, 41D, 35A, 110Q, 19V, 36Q, 101V, 38G, 131E, 23I, 120K, 91V, 111G, 116L

  • CPs:

    9D, 16G, 95D, 11G, 122D, 96E, 62P, 18A, 126A, 79F, 60G, 130L, 15I

  • Best cluster:

    8F, 91V, 10F, 112G, 15I, 16G, 18A, 19V, 20G, 28R, 35A, 36Q, 38G, 41D, 42W, 59V, 60G, 62P, 70Q, 72L, 73T, 79F, 81N, 91V, 95D, 96E, 122D, 126A, 130L, 131E, 133Y

  • Second best cluster:

    23I, 24T

  • Mapping predictions onto structure of 1nmn:

  • Associated grouping:

    • Group 1

      • RUVX_RICPR/17-150
      • RUVX_CHLMU/8-144
      • RUVX_CHLPN/8-144
      • RUVX_MYCGE/2-136
      • RUVX_MYCPN/2-136
    • Group 2

      • RUVX_XYLFT/11-147
      • RUVX_BUCAI/1-134
      • RUVX_ECOLI/3-136
      • RUVX_HAEIN/3-136
    • Group 3

      • RUVX_MYCTU/22-156
      • RUVX_BACSU/1-136
      • RUVX_RHOCA/17-150
      • RUVX_DEIRA/16-136
      • RUVX_SYNY3/5-138