SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q9X0E5_THEMA/48-170, pdb ID: 1rcu. SDPsite predicts following important positions (numbering corresponds to 1rcu):

  • SDPs:

    86F, 84-, 52S, 120-, 49E, 93L

  • CPs:

    122P, 105G, 108G, 104G, 89R, 112E, 109T

  • Best cluster:

    49E, 52S, 84-, 86F, 89R, 93L, 104G, 105G, 108G, 109T, 112E

  • Second best cluster:

    120-, 122P

  • Mapping predictions onto structure of 1rcu:

  • Associated grouping:

    • Group 1

      • Q9PJ65_CAMJE/63-201
      • Q9AA01_CAUCR/119-252
      • Q98D62_RHILO/98-231
      • Q9HY11_PSEAE/129-266
      • O67726_AQUAE/84-217
      • Q9FBL8_STRCO/116-249
      • Q9JSP2_NEIMA/72-205
      • Q9RX44_DEIRA/97-230
    • Group 2

      • Q9KTK3_VIBCH/164-334
      • Q9PG30_XYLFA/186-328
      • Q9HWR5_PSEAE/192-334
      • Q9CNF7_PASMU/190-332
      • YGDH_ECOLI/190-332
    • Group 3

      • Q9A8P0_CAUCR/286-418
      • Q984W8_RHILO/49-185
      • Q9K9A3_BACHD/45-177
      • Q49952_MYCLE/54-187
      • O05306_MYCTU/54-187
      • YJF5_YEAST/63-222
      • Q9FWG6_ORYSA/51-184
      • Y4923_PSEAE/48-181
      • Q9KWD2_AGRRH/18-151
      • FAS6_RHOFA/64-198
      • Q9LYH8_ARATH/54-186
      • Q9K8C2_BACHD/45-178
      • Q9FYM7_ARATH/54-198
      • O06986_BACSU/46-179
      • Q99VU1_STAAM/46-179
      • Q9T006_ARATH/69-202
      • Q9SJ51_ARATH/53-165