SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: YIIM_ECOLI/168-214, pdb ID: 1o65. SDPsite predicts following important positions (numbering corresponds to 1o65):

  • SDPs:

    185A, 187I, 215M, 210S, 182Q, 211W, 180T, 203S, 199H, 204A

  • CPs:

    207L, 181V, 217K, 180T

  • Best cluster:

    180T, 181V, 182Q, 185A, 187I, 203S, 204A, 207L, 210S, 211W, 215M

  • Second best cluster:

    199H, 217K

  • Mapping predictions onto structure of 1o65:

  • Associated grouping:

    • Group 1

      • Q9RT82_DEIRA/181-226
      • Q9I607_PSEAE/169-215
      • O86804_STRCO/189-233
      • P95151_MYCTU/201-244
    • Group 2

      • YIIM_ECOLI/168-214
      • Q9I1P0_PSEAE/174-219
      • Q9KF70_BACHD/170-214
      • YIIM_HAEIN/174-219
      • Q9PHR4_CAMJE/164-215
      • O34542_BACSU/173-219
      • Q99RT6_STAAM/171-217