SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q45996_CLOCE/195-278, pdb ID: 1ehx. SDPsite predicts following important positions (numbering corresponds to 1ehx):

  • SDPs:

    5T, 82T, 21T, 50V, 6I, 60L, 76T, 84T, 72F, 42Q, 42Q, 17S, 12S, 51T, 39-, 44T, 85V, 68L

  • CPs:

    43Y, 20D, 29G, 28N, 73F, 57Y, 64N

  • Best cluster:

    20D, 21T, 42Q, 43Y, 44T, 50V, 51T, 57Y, 60L, 64N, 68L, 84T, 85V

  • Second best cluster:

    5T, 6I, 28N, 29G, 72F, 73F

  • Mapping predictions onto structure of 1ehx:

  • Associated grouping:

    • Group 1

      • Q9AES2_9MOLU/1012-1097
      • Q9KF82_BACHD/364-456
      • GUNB_PAELA/367-459
    • Group 2

      • CBPA_CLOCL/1609-1697
      • Q45996_CLOCE/1315-1397
      • Q977Y4_CLOAB/762-849
      • GUNZ_CLOSR/741-829
      • CBPA_CLOCL/1609-1697
      • CBPA_CLOCL/1609-1697
      • CBPA_CLOCL/1609-1697
      • Q977Y4_CLOAB/762-849
      • O82830_CLOJO/195-278
      • Q45996_CLOCE/1315-1397
      • Q977Y4_CLOAB/762-849
      • Q977Y4_CLOAB/762-849
      • GUNZ_CLOSR/741-829
      • GUX2_CLOSR/661-747