SDPsite: prediction of protein active and specific recognition sites from sequence and structure

Home & Submit job
Algorithm & 
Format requirements
Contact us
Gallery of examples

##FAMILY##

This family contains a protein with resolved 3D structure: Q9X9L0_THETH/15-109, pdb ID: 1j3w. SDPsite predicts following important positions (numbering corresponds to 1j3w):

  • SDPs:

    88Q, 69A, 86V, 22E, 15R, 93G, 17V, 40F, 35I, 36D, 29A, 53P, 28G, 95Y, 99A, 89G, 80A, 59L, 60A, 108V, 55P

  • CPs:

    39G, 113L, 34L, 29A, 60A, 38K, 98V, 61T, 96L, 89H, 42L

  • Best cluster:

    34L, 35I, 36D, 38K, 39G, 40F, 42L, 59L, 60A, 61T, 95Y, 96L, 98V, 99A

  • Second best cluster:

    28G, 29A, 88Q, 89G, 93G, 108V, 113L

  • Mapping predictions onto structure of 1j3w:

  • Associated grouping:

    • Group 1

      • Y1389_METJA/12-100
      • Y311_METJA/2-91
      • Q9VER3_DROME/11-101
      • Q9W0F0_DROME/15-104
      • Q9W168_DROME/30-120
      • Q9VJ18_DROME/5-95
      • Q9V8Z2_DROME/14-104
      • Q9VQA6_DROME/4-94
      • Q9V9P1_DROME/4-94
      • Q22752_CAEEL/3-93
      • Q9SWQ6_CHLRE/6-99
      • Q9V3S4_DROME/4-94
      • DLC2B_MOUSE/3-93
      • Q9SM42_SPESI/4-94
    • Group 2

      • Q9RVN4_DEIRA/8-93
      • LM1P_CAEEL/5-92
      • LM1P_DROME/5-95
      • LM1P_HUMAN/5-95
    • Group 3

      • Q50883_MYXXA/14-105
      • Q9X9L0_THETH/15-109
      • Q9RW15_DEIRA/15-109
    • Group 4

      • Q9JRD5_NEIMA/5-95
      • Q9KZS1_STRCO/9-101
      • Q9RK33_STRCO/7-96
      • Q9RTY7_DEIRA/10-100
      • Q9RSE4_DEIRA/11-101
      • Q9AJP3_STRGR/8-100
      • Q9RJ72_STRCO/8-100
      • Q9X835_STRCO/12-103
      • Q9ADJ5_STRCO/5-97
      • Q9RJQ3_STRCO/21-114
      • Q9L138_STRCO/11-104
      • Q9L237_STRCO/13-104
      • O50393_MYCTU/10-101
      • O86524_STRCO/8-99
      • Q9KZJ0_STRCO/7-98
      • Q9KZI6_STRCO/16-107
      • Q9KZN1_STRCO/17-108