SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: Q9X0E6_THEMA/1-101, pdb ID: 1kr4. SDPsite predicts following important positions (numbering corresponds to 1kr4):

  • SDPs:

    86I, 42R, 66E, 21L, 23I, 46W, 12S, 61F, 103R, 89L, 7M, 107L, 29E, 74E, 44G, 70E, 64T, 34A, 84P, 85A, 27L, 17E, 51I

  • CPs:

    47W, 101W

  • Best cluster:

    12S, 23I, 27L, 29E, 34A, 61F, 64T, 66E, 70E, 74E, 84P, 85A, 86I, 101W, 103R, 107L

  • Second best cluster:

    46W, 47W

  • Mapping predictions onto structure of 1kr4:

  • Associated grouping:

    • Group 1

      • O67123_AQUAE/4-104
      • Q9YBC9_AERPE/4-104
      • Q9ZDY6_RICPR/49-149
      • Q9X0E6_THEMA/1-101
      • Q9V010_PYRAB/1-101
      • O28301_ARCFU/2-102
      • O27553_METTH/2-103
    • Group 2

      • Q9RS33_DEIRA/2-102
      • Q9Z6Z9_CHLPN/3-104
      • CUTA_ECOLI/11-112
      • P93009_ARATH/80-181
      • O60888_HUMAN/45-146
      • Q9VY55_DROME/90-191