SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q9X1V6_THEMA/6-217, pdb ID: 1o1z. SDPsite predicts following important positions (numbering corresponds to 1o1z):

  • SDPs:

    16N, 11A, 211I, 100E, 34L, 61K, 40K, 173E, 194L, 83E, 121S, 156E, 66T, 152V, 172L, 104A, 95N, 214E, 180R, 176V, 210V, 39S, 115K, 21F, 123-, 108L, 113K, 73L, 18L, 79-, 179L, 58L, 88V, 195N, 147S, 155V, 12K, 110-, 197P, 36V, 136Y, 139L, 208D, 109E, 44V, 30N, 120S, 22M, 114R, 93I, 138Y, 72E

  • CPs:

    48H, 41D, 192W, 8G, 7R, 49D, 213D

  • Best cluster:

    73L, 83E, 16N, 180R, 211I, 22M, 34L, 36V, 44V, 48H, 49D, 79-, 83E, 88V, 93I, 95N, 108L, 109E, 110-, 113K, 114R, 120S, 121S, 139L, 192W, 194L, 195N, 210V, 211I, 213D, 214E

  • Second best cluster:

    172L, 173E, 176V, 179L, 180R

  • Mapping predictions onto structure of 1o1z:

  • Associated grouping:

    • Group 1

      • Q44028_ALCEU/17-245
      • UGPQ_ECOLI/12-239
      • Q89384_CHVP1/5-217
      • Q9V208_PYRAB/12-236
      • Q9X1V6_THEMA/6-217
      • Q08959_YEAST/7-246
      • Q9SGA2_ARATH/39-318
      • Y2277_MYCTU/36-295
      • YE52_SCHPO/37-275
      • YKT5_SCHPO/752-1061
      • Q02979_YEAST/877-1212
      • Q9W2L6_DROME/349-632
      • YRS7_CAEEL/406-706
      • Q21407_CAEEL/416-716
      • Q9RSP0_DEIRA/37-277
      • Q9UAW8_CAEEL/68-331
      • Q9Z3F4_XANCV/274-516
      • O86738_STRCO/16-227
      • Q9VQU3_DROME/375-661
      • Q9VGB2_DROME/380-686
      • O07244_MYCTU/14-242
      • Q9RKX8_STRCO/20-243
      • O02322_CAEEL/73-322
      • Q20816_CAEEL/36-286
    • Group 2

      • Q9RWX3_DEIRA/7-220
      • P96236_MYCTU/17-259
      • Q9ZTU6_WHEAT/118-414
      • Y293_MYCGE/10-234
      • O07592_BACSU/6-233
      • GLPQ_BACSU/43-285
      • Q9SD81_ARATH/49-357
      • YQIK_BACSU/7-235
      • Q9YFI4_AERPE/15-220
      • Q9RZL4_DEIRA/249-566
      • Q45201_BORHE/38-330
      • GLPQ_ECOLI/36-350
      • GLPQ_TREPA/31-345
      • GLPQ_HAEIN/40-355