SDPsite - PF02811

SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: YCDX_ECOLI/4-197, pdb ID: 1m65. SDPsite predicts following important positions (numbering corresponds to 1m65):

SDPs:

120H, 5D, 180S, 179G, 97H
CPs:

9H, 7H, 71G, 39D
Best cluster:

179G, 180S
Second best cluster:

5D, 7H, 97H, 39D, 71G, 97H
Mapping predictions onto structure of 1m65:

Associated grouping:

Group 1

```
Y1295_METJA/3-181
```
```
O28722_ARCFU/2-177
```
```
O67116_AQUAE/45-212
```
```
Q9YG16_AERPE/27-190
```
```
HIS9_THEMA/2-199
```
```
Q9ZBU3_STRCO/96-348
```
```
Q9WZ68_THEMA/22-203
```
```
HIS9_LACLA/4-231
```
```
O59050_PYRHO/2-188
```
```
O29035_ARCFU/2-187
```
```
O27933_METTH/16-224
```
```
Q9S0Z4_ECOLI/14-200
```
```
Q9X173_THEMA/3-196
```
```
Q55394_SYNY3/54-244
```
```
O67277_AQUAE/7-195
```
```
Q9WZ29_THEMA/10-198
```
```
O27360_METTH/5-194
```
```
O59204_PYRHO/5-198
```
```
O29745_ARCFU/4-162
```
```
YCDX_ECOLI/4-197
```
```
YOR4_ANATH/11-203
```
```
O26650_METTH/336-513
```
```
TRPH_ECOLI/10-260
```
```
TRPH_HAEIN/5-252
```
```
Y417_METJA/3-158
```
```
Q9RS92_DEIRA/38-207
```
```
HIS9_SCHPO/3-250
```
```
HIS9_YEAST/2-281
```
```
HIS9_DEIRA/5-230
```
```
HIS9_BACSU/4-255
```
```
O87929_STRTR/2-204
```
```
Q9RX48_DEIRA/329-521
```
```
O67416_AQUAE/344-536
```
```
P94544_BACSU/336-531
```
```
CPSB2_STRPN/2-204
```
```
CPSB_STRA3/2-204
```
```
P72369_STAAU/2-199
```
```
CAPC_STAAU/2-199
```
```
YWQE_BACSU/2-199
```
```
O06031_LACLC/2-199
```
```
P72464_STRLI/99-296
```
```
P96221_MYCTU/98-297
```

Group 2

```
DPO3_THEMA/271-673
```
```
DPO3_MYCPN/322-732
```
```
DPO3_MYCGE/330-740
```
```
DPO3_STAAW/334-739
```
```
DPO3_BACSU/335-741
```
```
O31902_BACSU/2-243
```
```
DPO3A_HELPY/8-221
```
```
DPO3A_YERPE/2-214
```
```
DPO3A_AQUAE/6-217
```
```
DPO3A_SYNY3/4-211
```
```
DPO3A_BORBU/8-214
```
```
DPO3A_BACSU/4-198
```
```
DPO3A_CHLTR/4-230
```
```
DPO3A_CHLPN/4-230
```
```
DPO3A_MYCPN/3-175
```
```
DPO3A_RICPR/6-203
```
```
O50399_MYCTU/47-252
```
```
Q9S291_STRCO/5-228
```
```
DPO3A_PSEFL/6-205
```
```
DPO3A_TREPA/7-214
```
```
O87547_TREDE/6-213
```
```
DPO3A_HAEIN/8-206
```
```
DPO3A_MYCTU/11-231
```
```
DPO3A_STRCO/7-227
```
```
DPO3A_DEIRA/25-238
```
```
DPO3A_THEAQ/8-217
```
```
DPO3A_ECOLI/7-206
```
```
DPO3A_VIBCH/7-206
```