SDPsite: prediction of protein active and specific recognition sites from sequence and structure

Home & Submit job
Algorithm & 
Format requirements
Contact us
Gallery of examples

##FAMILY##

This family contains a protein with resolved 3D structure: YQEY_BACSU/6-147, pdb ID: 1ng6. SDPsite predicts following important positions (numbering corresponds to 1ng6):

  • SDPs:

    63D, 92P, 83E, 68F, 136G, 75D, 61R, 72N, 24T, 91L, 28M, 71A

  • CPs:

    132G, 147L, 100L, 127M, 64S, 86I, 143V, 58L, 108I

  • Best cluster:

    24T, 28M, 61R, 63D, 64S, 68F, 71A, 72N, 75D, 83E

  • Second best cluster:

    91L, 92P

  • Mapping predictions onto structure of 1ng6:

  • Associated grouping:

    • Group 1

      • Q12032_YEAST/31-181
      • Q72RP2_LEPIC/6-147
      • Q7MWM2_PORGI/6-148
      • Q8KES5_CHLTE/6-150
      • Q82EN2_STRAW/7-152
      • Q7MQQ1_WOLSU/7-147
      • Q9PHU3_CAMJE/6-146
      • Q9WZF4_THEMA/6-146
      • Q744H8_MYCPA/7-154
      • Q748B5_GEOSL/5-145
      • Q6MR59_BDEBA/6-147
      • Q50854_MYXXA/30-171
      • Q72B47_DESVH/6-146
      • Q6NAA7_RHOPA/5-149
      • Q7VWK1_BORPE/9-152
      • Q6NJU6_CORDI/7-153
      • Q98IA8_RHILO/4-148
      • Q8RB58_THETN/6-146
      • Q730M7_BACC1/6-146
      • Q8NTM9_CORGL/7-149
      • Q8FTV7_COREF/7-153
      • Q8FZJ9_BRUSU/8-149
      • P71480_LEGPN/6-145
      • Q9I5V9_PSEAE/7-147
      • Q892R6_CLOTE/12-152
      • Q8UDF8_AGRT5/5-149
      • Q92N96_RHIME/4-148
      • Q8XIU1_CLOPE/7-147
      • Q97JJ1_CLOAB/6-146
      • Q7ANY6_LISIN/6-147
      • Q9KD64_BACHD/6-146
      • Q7NRL6_CHRVO/6-146
      • Q82XN0_NITEU/6-146
      • Q8XX99_RALSO/6-146
      • Q83BB8_COXBU/8-148
      • Q8EHD8_SHEON/6-146
      • Q9JW82_NEIMA/6-146
      • Q831T4_ENTFA/6-146
      • YQEY_BACSU/6-147
      • Q8EPX0_OCEIH/6-147
      • Q7MP01_VIBVY/6-146
      • Q6LV12_PHOPR/6-146
      • Q87B15_XYLFT/6-146
      • Q8P493_XANCP/6-146
      • Q88VR6_LACPL/6-146
      • Q74IY6_LACJO/6-146
    • Group 2

      • Q74MN5_NANEQ/304-440
      • GATB_METKA/307-457
      • GATB_METTH/303-449
      • GATB_ARCFU/323-470
      • GATB_BORBU/335-482
      • GATB_EMENI/427-576
      • GATB_METMP/314-467
      • GATB_METJA/321-470
      • GATB_METMA/328-493
      • GATB_HALN1/346-492
      • GATB_TREPA/359-506
      • GATB_TREDE/344-491
      • GATB_AQUAE/328-475
      • Q9VCD0_DROME/361-511
      • GATB_MYCMS/327-475
      • GATB_UREPA/330-475
      • GATB_HUMAN/406-555
      • Q8BW84_MOUSE/406-549
      • GATB_THEMA/332-479
      • Q9UT77_SCHPO/374-522
      • Q6KHR6_MYCMO/323-468
      • GATB_MYCPU/323-468
      • GATB_MYCGA/329-477
      • GATB2_CLOAB/329-476
      • GATB_SULTO/330-476
      • GATB_SULSO/323-469
      • Q751Q9_ASHGO/369-532
      • GATB_YEAST/373-537
      • GATB_MYCPE/328-477
      • GATB_THETN/326-473
      • GATB_MYCPN/324-469
      • GATB_MYCGE/324-469
      • Q72AV5_DESVH/328-475
      • Q7PAU2_RICSI/335-481
      • GATB_CLOTE/326-473
      • GATB1_CLOAB/326-473
      • GATB_GLOVI/343-490
      • GATB_BDEBA/328-476
      • Q6MDF6_PARUW/341-490
      • Q9FV81_ARATH/399-546
      • GATB_OCEIH/326-473
      • GATB_LACLA/327-474
      • GATB_TROW8/356-501
      • Q72H75_THET2/319-466
      • GATB_AERPE/333-478
      • SYQ_DEIRA/710-851
      • GATB_GEOSL/330-477
      • GATB_CHLPN/336-485
      • GATB_STRR6/327-474
      • GATB_STRMU/327-474
      • GATB_BIFLO/350-497
      • GATB_CAUCR/350-495
      • Q6SGF1_9BACT/328-475
      • GATB_WOLPM/326-472
      • GATB_CHLTR/336-485
      • GATB_CHLCV/336-485
      • GATB_SYNEL/349-496
      • GATB_SYNY3/345-492
      • GATB_ANASP/345-489
      • GATB_STASP/325-472
      • GATB_BACST/326-473
      • GATB_STRAW/353-500
      • GATB_AGRT5/351-496
      • GATB_COXBU/328-477
      • GATB_CAMJE/324-471
      • GATB_RHOBA/349-494
      • GATB_CHLTE/326-473
      • Q72VS5_LEPIC/332-479
      • GATB_FUSNN/329-480
      • GATB_PROMM/346-493
      • GATB_LACJO/326-473
      • GATB_LACPL/325-471
      • Q73EK7_BACC1/325-472
      • GATB_MYCLE/359-506
      • GATB_CORDI/353-500
      • GATB_RHOPA/346-492
      • GATB_BRAJA/344-490
      • GATB_PSESM/328-479
      • GATB_WOLSU/326-471
      • GATB_PROMP/341-488
      • GATB_PROMA/342-489
      • GATB_ENTFA/326-473
      • Q71YR4_LISMF/326-473
      • GATB_MORCA/339-488
      • GATB_HELPY/327-473
      • GATB_HELHP/328-473
      • GATB_NITEU/327-476
      • GATB_CHRVO/327-474
      • GATB_NEIMA/327-475
      • GATB_BORPE/332-483
      • GATB_RALSO/333-485