SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q9X1V5_THEMA/22-105, pdb ID: 1p8c. SDPsite predicts following important positions (numbering corresponds to 1p8c):

  • SDPs:

    54S

  • CPs:

    66H, 74G, 41L

  • Best cluster:

    54S, 66H

  • Second best cluster:

    41L, 74G

  • Mapping predictions onto structure of 1p8c:

  • Associated grouping:

    • Group 1

      • Q89IL8_BRAJA/43-126
      • Q8YLD1_ANASP/42-125
      • Q8UDR5_AGRT5/44-127
      • Q98JY9_RHILO/46-129
    • Group 2

      • Q7VTI6_BORPE/91-170
      • Q8XYW1_RALSO/93-173
      • Q83BM5_COXBU/96-175
      • Q8FVW4_BRUSU/94-170
      • Q9ANL0_BRAJA/95-178
      • Q9A268_CAUCR/95-178
      • AHPD_MYCTU/93-176
      • Q82IC5_STRAW/94-177
      • Q9X5V1_STRVD/94-172
    • Group 3

      • Q9WYF2_THEMA/12-95
      • Q8PZ63_METMA/30-113
      • Q8PZX1_METMA/20-103
    • Group 4

      • O26169_METTH/26-109
      • Q8Q0J3_METMA/14-97
      • O29899_ARCFU/36-119
      • Q8PYE4_METMA/43-127
      • Q8UGQ2_AGRT5/19-101
      • Q8Y972_LISMO/15-97
    • Group 5

      • YCO4_PARDE/21-104
      • O27018_METTH/13-96
      • Q8PYL6_METMA/19-102
      • Q8RCV6_THETN/21-104
      • Q8PUU3_METMA/18-101
      • Q8PYV8_METMA/9-92
      • Q8PZJ3_METMA/27-110
      • Q8EMR2_OCEIH/135-218
      • Q8EMR2_OCEIH/135-218
      • Q8NLN6_CORGL/20-105
      • Q978P3_THEVO/22-105
      • Q9HLI4_THEAC/22-105
      • Q81CE2_BACCR/28-111
      • O32166_BACSU/32-115
      • Q9K796_BACHD/28-111
      • Q8PBZ0_XANCP/31-114
      • Q9X1V5_THEMA/22-105
      • Q54401_STRLA/19-103
      • Q89N13_BRAJA/21-105
      • Q8DKG6_SYNEL/35-118
      • O06800_MYCTU/26-109
      • YAC7_ALCEU/24-107
      • Q87XC8_PSESM/23-106
      • Y1053_HAEIN/24-107
      • Q8GQ78_PSEAE/24-107
      • Q88K69_PSEPK/28-111
      • Q7WQ74_BORBR/23-106
      • Q9I5X1_PSEAE/24-106
      • Q9JTG8_NEIMA/24-106
      • Q89I69_BRAJA/24-107
      • Q7P1X7_CHRVO/26-109
    • Group 6

      • P73604_SYNY3/23-107
      • Q89PM8_BRAJA/34-118
      • O74758_SCHPO/128-205
      • YJ81_YEAST/199-283
      • Q7VG63_HELHP/216-301
      • Q87FG9_VIBPA/158-243
      • Q8A7Y1_BACTN/311-396
      • Q8TTM1_METAC/27-111
      • Q9RVP9_DEIRA/30-114
      • Q8FQN1_COREF/33-119
      • Q8A8P6_BACTN/142-227
      • Q8A7Y1_BACTN/311-396
      • Q87FG9_VIBPA/158-243
      • Q9PCL2_XYLFA/167-252
      • Q930M4_RHIME/308-395
      • YNQ5_PARDE/35-121
      • Q7VG63_HELHP/216-301
      • Q8RN34_CAMJE/39-124
      • P71826_MYCTU/26-111
      • Q8UH27_AGRT5/28-112
      • Q9KXX7_STRCO/38-123
      • Q930M4_RHIME/308-395
      • O26336_METTH/31-115
      • YNQ6_PARDE/40-126
      • Q52659_RHOCA/40-126
      • Q81RU7_BACAN/19-103
      • Q87H24_VIBPA/33-118
      • Q8EKK9_SHEON/33-118
      • Q7WPY0_BORBR/32-117
      • Q8CL33_YERPE/30-114
      • Q8E1D2_STRA5/17-102
      • Q87WR5_PSESM/34-118
      • Q9CE69_LACLA/31-116
      • Q930M4_RHIME/308-395
      • Q828B2_STRAW/38-123
      • Q7NSY1_CHRVO/13-97
      • Q8XQ14_RALSO/17-101
      • Q9RV26_DEIRA/68-152
      • Q7VG56_HELHP/77-162
      • Q84H85_9MICC/39-123
      • Q930A6_RHIME/168-252
      • Q9CFE3_LACLA/16-101
      • Q8DV36_STRMU/17-102
      • Q8NRJ9_CORGL/17-103
      • Q7WNG4_BORBR/34-118
      • Q7W0B6_BORPE/40-124
      • O67982_RHOOP/297-381
      • Q8FN50_COREF/40-124
      • DC4C_ACIAD/35-119
      • Q8FW21_BRUSU/42-126
      • Q9KX42_9RHIZ/39-123
      • Q930A6_RHIME/168-252
      • Q881M4_PSESM/170-254
      • Q8Y1Q8_RALSO/150-234
      • Q89LE4_BRAJA/177-261
      • Q881M4_PSESM/170-254
      • Q88TS1_LACPL/17-102
      • Q8EWL7_MYCPE/18-103
      • Q88GS0_PSEPK/34-118
      • Q8KL13_RHIET/51-135
      • Q8KL33_RHIET/67-151
      • Q9L5A7_9PROT/34-118
      • Q9L5B1_9RHOB/33-117
      • Q89LE4_BRAJA/177-261
      • Q8Y1Q8_RALSO/150-234
      • Q7WNR4_BORBR/34-118
      • O86608_STRCO/355-439
      • Q82MF4_STRAW/285-369
      • Q89UN1_BRAJA/34-118
      • Q89IH0_BRAJA/35-120
      • Q9A5N6_CAUCR/302-387
      • Q8XX67_RALSO/35-119
      • Q7WPN1_BORBR/34-118
      • Q88N35_PSEPK/35-119
      • Q8PDG7_XANCP/35-119
      • Q8D1N8_YERPE/49-133
      • Q8UK98_AGRT5/34-118
      • Q97UW0_SULSO/43-128
    • Group 7

      • Y1511_METJA/18-101
      • Q8TXW6_METKA/29-113
      • O26787_METTH/36-120
      • Y742_METJA/19-103
      • Q8PSC4_METMA/27-113
      • Q8TP59_METAC/27-113
    • Group 8

      • Q82QS6_STRAW/57-140
      • Q8TN24_METAC/40-121
      • Q89SZ5_BRAJA/50-134
      • Q89RQ0_BRAJA/34-116
      • O53905_MYCTU/40-123
      • Q89NA9_BRAJA/36-119
      • Q9A3V6_CAUCR/52-136
      • Q7WNI3_BORBR/39-122
      • Q872E4_NEUCR/44-109
    • Group 9

      • Q82MM5_STRAW/103-186
      • Q7USN7_RHOBA/41-121
      • Q7NI16_GLOVI/40-125
      • Q8NUW4_STAAW/10-92
      • Q7P0I8_CHRVO/10-92
      • Q8FER3_ECOL6/13-95
      • Q7VW83_BORPE/12-94
      • Q93HH4_STRAW/42-128
      • Q9RJG5_STRCO/31-117
      • Q8FN71_COREF/14-100
      • Q8NN44_CORGL/15-100
      • Q9RDI4_STRCO/14-96
      • Q89CI6_BRAJA/13-94
      • Q98L97_RHILO/13-95
      • Q7NXV7_CHRVO/15-94
      • Q840R0_9GAMM/10-95
      • Q7NMU5_GLOVI/47-129
      • Q9I6M1_PSEAE/12-94
      • Q82PT4_STRAW/14-96
      • Q9FC57_STRCO/14-95
      • Q8D7H9_VIBVU/12-94
      • P96684_BACSU/12-94
      • Q7WHA8_BORBR/12-94
      • Q98K47_RHILO/12-94
      • Q9KZB1_STRCO/28-109
      • Q89D50_BRAJA/12-94
      • Q89M11_BRAJA/16-98
      • Q82A02_STRAW/34-115
      • Q92XD0_RHIME/12-93
      • Q987X0_RHILO/12-95
      • Q8UI08_AGRT5/12-94
      • Q92S80_RHIME/12-94
      • Q9KZB2_STRCO/10-92
      • Q7WN29_BORBR/12-94
      • Q89PR3_BRAJA/12-94
    • Group 10

      • Q8GMC9_STRGL/56-141
      • Q9RTJ7_DEIRA/77-160
      • Q89F01_BRAJA/58-143
      • Q881R7_PSESM/57-141
      • Q8FN18_COREF/270-361
      • Q8NMX8_CORGL/269-355
      • Q89XS3_BRAJA/55-139
      • Q8UJP9_AGRT5/55-127
    • Group 11

      • Q7MJJ5_VIBVY/55-138
      • Q7ULD6_RHOBA/54-137
      • Q88IP0_PSEPK/41-115
      • Q7NX57_CHRVO/41-125
      • Q53427_LEGPN/38-123
      • Q7WJL9_BORBR/42-124
    • Group 12

      • Q9JUP9_NEIMA/41-123
      • Q7UTX7_RHOBA/162-245
      • Q8ZSI6_ANASP/44-126
      • Q8DUG8_STRMU/42-124
      • Q8RR45_STRSU/50-134
      • Q9I1E7_PSEAE/38-118
      • Q88GS9_PSEPK/72-155