SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: CSRA_PSEAE/1-60, pdb ID: 1vpz. SDPsite predicts following important positions (numbering corresponds to 1vpz):

  • SDPs:

    34V, 48Y, 40V, 27G, 38K, 24G, 23L, 47I, 25V, 32I, 19T, 41A

  • CPs:

    37P, 33G, 1M, 6R, 44R

  • Best cluster:

    32I, 33G, 34V, 37P, 38K, 40V, 41A, 44R, 47I, 48Y

  • Second best cluster:

    23L, 24G, 25V

  • Mapping predictions onto structure of 1vpz:

  • Associated grouping:

    • Group 1

      • CSRA_CLOAB/1-63
      • Q7UF92_RHOBA/1-58
      • CSRA_THEMA/1-63
      • Q8RPE6_LEGPN/1-61
      • CSRA_BACHD/1-62
      • CSRA_BACSU/1-63
      • CSRA_OCEIH/1-63
      • CSRA_RHOBA/1-60
      • Q88M29_PSEPK/1-58
      • CSRA_TREPA/1-60
      • Q7UNH6_RHOBA/1-59
      • Q87Y66_PSESM/1-60
      • CSRA1_COXBU/1-62
      • CSRA_LEPIN/1-62
      • CSRA_BORBU/1-63
      • CSRA_HAEDU/1-60
      • CSRA_HAEIN/1-63
      • CSRA_PASMU/1-60
      • CSRA2_COXBU/1-60
      • Q9EV37_LEGPN/1-60
      • CSRA1_PSESM/1-63
      • CSRA_PSEPK/1-60
      • CSRA3_PSESM/1-61
      • CSRA_XANCP/1-61
      • CSRA_BUCBP/1-60
      • CSRA_CANBF/1-60
      • Q88EJ0_PSEPK/1-61
      • CSRA_PSEAE/1-60
    • Group 2

      • CSRA_WOLSU/1-63
      • CSRA_HELHP/1-62
      • CSRA_HELPY/1-60