SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: DTD_HAEIN/28-144, pdb ID: 1j7g. SDPsite predicts following important positions (numbering corresponds to 1j7g):

  • SDPs:

    140F, 92S, 94S, 97A, 90R, 89L, 41K, 52Y, 62M, 28L, 65N, 56S, 114A, 68Q, 133T, 59N, 128M, 37D, 53R, 122G, 122G, 126A, 121T, 117L, 75I

  • CPs:

    140P, 32G, 81F, 90G, 137N, 139G, 93P, 37D, 80Q, 82T, 142T, 125G, 127F, 95F, 55F, 53R

  • Best cluster:

    80Q, 81F, 82T, 92S, 93P, 94S, 95F

  • Second best cluster:

    28L, 52Y, 53R, 55F, 56S, 62M, 65N, 75I, 121T, 122G, 125G, 126A, 127F, 128M, 139G, 140F

  • Mapping predictions onto structure of 1j7g:

  • Associated grouping:

    • Group 1

      • DTD_BACSU/28-145
      • DTD_THEAQ/28-145
      • DTD_BACHD/28-145
    • Group 2

      • DTD_MYCTU/31-143
      • DTD_VIBCH/28-144
      • DTD_XANCP/28-146
      • DTD_PSEAE/28-145
      • DTD_STRGR/37-149
      • Q45303_CORGL/32-144
      • DTD_ECOLI/28-145
      • DTD_YERPE/28-145
      • DTD_HAEIN/28-144
      • DTD_PASMU/28-144
    • Group 3

      • DTD_CHLTE/28-146
      • DTD_FUSNN/28-145
      • DTD_DEIRA/28-145
      • DTD_LACLA/28-144
      • DTD_STRPN/28-144
      • DTD_STRPY/28-144
    • Group 4

      • DTD_STAAM/27-144
      • O14274_SCHPO/28-147
      • DTD_YEAST/28-148
      • Q9VGP0_DROME/28-141
      • Q8S2P5_ORYSA/95-214
      • Q9XUP4_CAEEL/28-147