SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Y552_STRPN/14-155, pdb ID: 1ib8. SDPsite predicts following important positions (numbering corresponds to 1ib8):

  • SDPs:

    42L, 56D, 75P, 95T, 57T, 91R, 60L, 55N, 108H, 43S, 31I, 85T, 107I, 92P, 132E, 73P, 127A, 67V, 34G, 48K, 145T, 52I, 86S, 90E, 121F, 101G, 96K, 69D, 47D, 122E, 66P, 70T

  • CPs:

    96G, 95P, 112G, 131G, 99R, 63T, 91E

  • Best cluster:

    47D, 48K, 52I, 55N, 56D, 57T, 60L, 85T, 86S

  • Second best cluster:

    90E, 91R, 92P, 95T, 96K, 99R, 107I, 108H, 121F, 122E

  • Mapping predictions onto structure of 1ib8:

  • Associated grouping:

    • Group 1

      • Y1989_CORGL/12-154
      • Y5703_STRCO/12-151
      • Y799_BORBU/31-161
      • Y893_TREPA/13-150
      • Y239_CHLTE/13-169
      • Q94JV0_ARATH/135-302
      • Y1559_MYCLE/29-135
      • Y2867_MYCBO/14-153
    • Group 2

      • Y260_AQUAE/15-153
      • Y1796_DEIRA/14-150
      • YNUA_THETH/22-148
      • Y1778_THEMA/13-146
      • Y2162_BRUSU/34-176
      • Y3828_ANASP/12-149
      • Y742_SYNY3/12-149
      • Y2023_FUSNN/14-149
      • Y1895_NEIMA/12-143
      • Y1287_RALSO/6-146
      • Y5550_RHILO/25-167
      • Y138_CAMJE/2-136
      • Y1046_HELPY/8-142
      • Y1798_CLOAB/8-145
      • Y1690_CLOPE/13-150
      • Y1397_THETN/11-144
      • Y1282_HAEIN/11-147
      • Y236_RHIME/28-170
      • Y090_AGRT5/23-165
      • Y1148_STAAW/11-151
      • Y3498_YERPE/13-148
      • Y641_VIBCH/11-147
      • Y233_XYLFA/27-171
      • Y2513_XANCP/11-155
      • YSEG_PSESY/17-153
      • Y4746_PSEAE/11-147
      • YHHE_LACLA/11-153
      • Y1358_LISIN/11-151
      • Y1499_STRP3/33-174
      • Y552_STRPN/14-155
      • YLXS_BACSU/12-152
      • Y2417_BACHD/12-152