SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: GIDB_BACSU/21-213, pdb ID: 1xdz. SDPsite predicts following important positions (numbering corresponds to 1xdz):

  • SDPs:

    36N, 57D, 104K, 88K, 94L, 40N, 212I, 74C, 161P, 117Q, 125H, 25F, 49E, 51Y, 44I, 59I, 213M, 191L, 42T, 141Y, 47K, 103N, 169F, 143I, 38K, 102L, 80A, 69Q, 187A, 96V, 204P, 152L, 192G, 60T, 50V, 185K, 113S, 181L, 154V, 118L, 163V

  • CPs:

    83P, 75D, 77G, 79G, 81G, 147R, 108F, 173K, 84S, 54H, 28Y, 167G, 36N, 142D, 41L, 104K, 109L, 180E, 129E, 127R, 57D, 100D, 40N, 98I, 87I

  • Best cluster:

    25F, 28Y, 36N, 40N, 41L, 42T, 44I, 49E, 50V, 51Y, 54H, 57D, 59I, 60T, 74C, 75D, 77G, 79G, 80A, 81G, 83P, 84S, 87I, 88K, 96V, 98I, 100D, 102L, 103N, 104K, 108F, 109L, 147R

  • Second best cluster:

    141Y, 142D, 143I, 152L, 163V, 167G, 169F, 180E, 181L, 185K, 187A, 191L, 192G, 213M

  • Mapping predictions onto structure of 1xdz:

  • Associated grouping:

    • Group 1

      • GIDB_HELPY/1-178
      • GIDB_BORBU/20-204
      • GIDB_TREPA/26-211
      • GIDB_COXBU/20-197
      • GIDB_PSEPK/28-210
      • GIDB_ECOLI/20-200
      • GIDB_HAEIN/20-200
    • Group 2

      • GIDB_STRCO/21-206
      • GIDB_MYCTU/15-201
      • GIDB_MYCLE/36-222
    • Group 3

      • GIDB_MYCCA/20-206
      • GIDB_AQUAE/17-190
      • GIDB_MYCGE/2-185
      • GIDB_MYCPN/2-184