SDPsite - PF02492

SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: YJIA_ECOLI/5-184, pdb ID: 1nij. SDPsite predicts following important positions (numbering corresponds to 1nij):

SDPs:

99T, 13L, 12F, 148Q, 103D, 64C, 67C, 8L, 102A, 145A, 73L, 146Q, 107I, 98C, 122L, 62N, 140N, 10T, 143T, 41G, 76A, 38N, 106P, 131D, 49L, 123L, 101M, 7T, 65I, 45V
CPs:

14G, 16G, 63G, 100G, 161D, 46D, 17K, 159K
Best cluster:

103D, 12F, 13L, 98C, 99T, 101M, 102A, 103D, 106P, 107I, 145A, 146Q, 148Q
Second best cluster:

73L, 8L, 122L, 123L
Mapping predictions onto structure of 1nij:

Associated grouping:

Group 1

```
P74756_SYNY3/22-198
```
```
O25082_HELPY/5-188
```
```
Q98FX4_RHILO/7-190
```
```
YJIA_ECOLI/5-184
```
```
Q9HVI5_PSEAE/13-193
```
```
Q9M8L6_ARATH/90-277
```
```
Q98CG8_RHILO/91-268
```
```
Q9ABB0_CAUCR/12-189
```
```
Q9ZF88_BURPS/6-212
```
```
Q9KBY4_BACHD/7-212
```
```
Q9FZD7_ARATH/43-236
```
```
P94400_BACSU/5-211
```
```
Q99WF2_STAAM/5-211
```
```
O74310_SCHPO/62-246
```
```
Q53184_RHOSO/7-207
```
```
Q9HT39_PSEAE/6-211
```
```
P47K_PSECL/11-215
```
```
Q9PCF1_XYLFA/13-219
```
```
YN8H_YEAST/72-274
```
```
Q9NYD0_HUMAN/43-231
```

Group 2

```
Q9JU67_NEIMA/8-186
```
```
O30787_RHOCA/8-213
```
```
Q9HZQ2_PSEAE/33-241
```
```
Q55822_SYNY3/5-220
```
```
Q9HT42_PSEAE/6-177
```
```
Q9KM61_VIBCH/6-182
```
```
COBW_PSEDE/11-216
```
```
Q98KQ2_RHILO/9-214
```

Group 3

```
O26875_METTH/34-195
```
```
HYPB_METJA/34-197
```
```
O28903_ARCFU/31-192
```
```
HYPB_HELPY/47-212
```
```
HYPB_SYNY3/89-252
```
```
P94161_SYNP6/50-213
```
```
P73268_SYNY3/34-201
```
```
O66901_AQUAE/62-225
```
```
O30462_ANASP/89-252
```
```
HYPB_ECOLI/105-268
```
```
HYPB_RHOCA/148-310
```
```
HYPB_RHILV/106-269
```
```
HYPB_BRAJA/107-270
```
```
HYPB_AZOCH/100-263
```
```
O07450_ALCEU/106-266
```
```
HYPB_ALCEU/98-301
```

Group 4

```
O64700_ARATH/74-246
```
```
UREG_MYCTU/26-199
```
```
UREG_SYNY3/6-179
```
```
UREG_BORBR/17-190
```
```
UREG_KLEAE/8-181
```
```
UREG_ACTPL/5-178
```
```
UREG_HELPY/2-175
```
```
UREG_YEREN/13-189
```
```
UREG_STAXY/5-178
```
```
UREG_BACSB/4-177
```
```
UREG_STRSL/6-179
```
```
UREG_UREPA/5-179
```