SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: YJIA_ECOLI/5-184, pdb ID: 1nij. SDPsite predicts following important positions (numbering corresponds to 1nij):

  • SDPs:

    99T, 13L, 12F, 148Q, 103D, 64C, 67C, 8L, 102A, 145A, 73L, 146Q, 107I, 98C, 122L, 62N, 140N, 10T, 143T, 41G, 76A, 38N, 106P, 131D, 49L, 123L, 101M, 7T, 65I, 45V

  • CPs:

    14G, 16G, 63G, 100G, 161D, 46D, 17K, 159K

  • Best cluster:

    103D, 12F, 13L, 98C, 99T, 101M, 102A, 103D, 106P, 107I, 145A, 146Q, 148Q

  • Second best cluster:

    73L, 8L, 122L, 123L

  • Mapping predictions onto structure of 1nij:

  • Associated grouping:

    • Group 1

      • P74756_SYNY3/22-198
      • O25082_HELPY/5-188
      • Q98FX4_RHILO/7-190
      • YJIA_ECOLI/5-184
      • Q9HVI5_PSEAE/13-193
      • Q9M8L6_ARATH/90-277
      • Q98CG8_RHILO/91-268
      • Q9ABB0_CAUCR/12-189
      • Q9ZF88_BURPS/6-212
      • Q9KBY4_BACHD/7-212
      • Q9FZD7_ARATH/43-236
      • P94400_BACSU/5-211
      • Q99WF2_STAAM/5-211
      • O74310_SCHPO/62-246
      • Q53184_RHOSO/7-207
      • Q9HT39_PSEAE/6-211
      • P47K_PSECL/11-215
      • Q9PCF1_XYLFA/13-219
      • YN8H_YEAST/72-274
      • Q9NYD0_HUMAN/43-231
    • Group 2

      • Q9JU67_NEIMA/8-186
      • O30787_RHOCA/8-213
      • Q9HZQ2_PSEAE/33-241
      • Q55822_SYNY3/5-220
      • Q9HT42_PSEAE/6-177
      • Q9KM61_VIBCH/6-182
      • COBW_PSEDE/11-216
      • Q98KQ2_RHILO/9-214
    • Group 3

      • O26875_METTH/34-195
      • HYPB_METJA/34-197
      • O28903_ARCFU/31-192
      • HYPB_HELPY/47-212
      • HYPB_SYNY3/89-252
      • P94161_SYNP6/50-213
      • P73268_SYNY3/34-201
      • O66901_AQUAE/62-225
      • O30462_ANASP/89-252
      • HYPB_ECOLI/105-268
      • HYPB_RHOCA/148-310
      • HYPB_RHILV/106-269
      • HYPB_BRAJA/107-270
      • HYPB_AZOCH/100-263
      • O07450_ALCEU/106-266
      • HYPB_ALCEU/98-301
    • Group 4

      • O64700_ARATH/74-246
      • UREG_MYCTU/26-199
      • UREG_SYNY3/6-179
      • UREG_BORBR/17-190
      • UREG_KLEAE/8-181
      • UREG_ACTPL/5-178
      • UREG_HELPY/2-175
      • UREG_YEREN/13-189
      • UREG_STAXY/5-178
      • UREG_BACSB/4-177
      • UREG_STRSL/6-179
      • UREG_UREPA/5-179