SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: MRAZ_MYCPN/1-71, pdb ID: 1n0e. SDPsite predicts following important positions (numbering corresponds to 1n0e):

  • SDPs:

    43L, 38K, 69K, 90T, 50F, 56V, 76Y, 94K, 65L, 44P, 73F, 57I, 32N, 32N, 32N

  • CPs:

    36D, 73F, 40R, 39N, 44P

  • Best cluster:

    36D, 38K, 39N, 40R, 43L, 44P, 56V, 57I

  • Second best cluster:

    50F, 69K, 73F, 76Y

  • Mapping predictions onto structure of 1n0e:

  • Associated grouping:

    • Group 1

      • MRAZ_TREPA/78-148
      • MRAZ_STAAU/72-143
      • MRAZ_ECOLI/77-143
      • MRAZ_HAEIN/77-148
      • MRAZ_MYCTU/72-142
      • MRAZ_MYCLE/72-142
      • MRAZ_BACSU/72-142
      • MRAZ_ENTHR/72-142
      • MRAZ_ENTFA/72-142
    • Group 2

      • MRAZ_MYCPN/72-141
      • MRAZ_MYCGE/72-141
      • MRAZ_TREPA/78-148
      • MRAZ_STAAU/72-143
      • MRAZ_MYCLE/72-142
      • MRAZ_MYCTU/72-142
      • MRAZ_BACSU/72-142
      • MRAZ_ENTFA/72-142
      • MRAZ_ENTHR/72-142