SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q8P2Q3_STRP3/6-231, pdb ID: 1pg6. SDPsite predicts following important positions (numbering corresponds to 1pg6):

  • SDPs:

    17P, 90P, 39H, 154N, 76T, 152L, 109N, 173N, 108L, 38Y, 143M, 45L, 89A, 159I, 179W, 113F, 121Q, 85K, 15Q, 60V, 142V, 102G, 107R, 42N, 145T, 95Q, 32Q, 87A, 24E, 116L, 118G, 144T, 156F

  • CPs:

    147G, 34G, 149G, 172D

  • Best cluster:

    17P, 32Q, 34G, 38Y, 39H, 76T, 87A, 89A, 90P, 95Q, 107R, 108L, 109N, 113F, 116L, 121Q, 142V, 144T, 145T, 152L, 154N, 159I, 179W

  • Second best cluster:

    172D, 173N

  • Mapping predictions onto structure of 1pg6:

  • Associated grouping:

    • Group 1

      • Q98ND1_RHILO/8-220
      • Q9HXU4_PSEAE/6-236
      • Q94GQ4_ORYSA/23-246
      • Q97XI4_SULSO/1-218
      • Q974L4_SULTO/1-218
      • Q9HK65_THEAC/1-220
      • Q978I4_THEVO/4-222
      • Q97IV3_CLOAB/5-240
      • Q8LCF1_ARATH/23-250
      • O23585_ARATH/23-239
      • Q8PE23_XANCP/22-260
      • Q9A979_CAUCR/23-257
    • Group 2

      • Q97FJ9_CLOAB/3-213
      • P74604_SYNY3/1-218
      • Q8NIZ5_NEUCR/229-385
    • Group 3

      • P74605_SYNY3/53-275
      • P74603_SYNY3/1-218
      • Q9ZG12_RHOER/1-223
    • Group 4

      • Q9YA00_AERPE/7-224
      • Q9WYK1_THEMA/1-218
      • Q9HPJ4_HALN1/1-220
      • O29629_ARCFU/1-215
      • O26842_METTH/1-215
      • Q9V255_PYRAB/1-215
      • Q8U4D6_PYRFU/1-215
    • Group 5

      • Q97LK4_CLOAB/41-252
      • Q9RXE5_DEIRA/37-251
      • Q9RSA9_DEIRA/31-250
      • Q8XHY9_CLOPE/43-262
      • Q8PW16_METMA/49-264
      • Q8TMN8_METAC/42-257
    • Group 6

      • Q8TWX2_METKA/28-243
      • Q9L2B4_STRCO/9-214
      • Q9HRV1_HALN1/33-237
      • Q9FCJ2_STRCO/12-226
      • Q9L2B2_STRCO/26-235
      • Q9L2B3_STRCO/4-219
      • Q9FCJ3_STRCO/379-584
      • Q9RWP1_DEIRA/26-240
      • Q8P518_XANCP/46-253
      • Q8Q099_METMA/21-228
      • Q8TPT0_METAC/21-228
      • Q9K4M1_STRCO/17-216
      • Q9FCJ1_STRCO/12-222