SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: PFPI_PYRHO/29-166, pdb ID: 1g2i. SDPsite predicts following important positions (numbering corresponds to 1g2i):

  • SDPs:

    101H, 152A, 156A, 95P, 153D, 157W

  • CPs:

    114C, 78G

  • Best cluster:

    152A, 153D, 156A, 157W

  • Second best cluster:

    78G, 101H

  • Mapping predictions onto structure of 1g2i:

  • Associated grouping:

    • Group 1

      • Q9X7Q3_STRCO/30-166
      • Q9RJN9_STRCO/36-171
      • Q9RJG8_STRCO/43-182
      • Q9X7Q2_STRCO/43-180
    • Group 2

      • O83459_TREPA/31-194
      • Y029_MYCGE/30-166
      • THIJ_ECOLI/31-173
      • PARK7_MOUSE/32-173
      • P90994_CAEEL/33-171
      • O16228_CAEEL/34-170
      • O51566_BORBU/29-167
      • O49502_ARATH/124-252
      • Q9VA37_DROME/49-188
      • Q9V6V5_DROME/59-199
    • Group 3

      • Q45084_BURCE/36-192
      • PFPI_PYRHO/29-166
      • Q9ZV19_ARATH/35-199
      • Q9ZV19_ARATH/35-199
      • Q9YFC2_AERPE/30-167
      • Y1281_ARCFU/29-166
      • O66869_AQUAE/30-167
    • Group 4

      • Y1875_STAAM/31-171
      • Q9ZBZ8_STRCO/30-176
      • Q9RV31_DEIRA/38-181
      • YHBO_ECOLI/31-171
      • GS18_BACSU/30-170
    • Group 5

      • Q9XDF2_STRGR/56-234
      • Q9RX24_DEIRA/59-257
      • O43084_SCHPO/86-261
      • YAOD_SCHPO/48-221
      • HSP31_YEAST/62-236
      • O74914_SCHPO/63-239
      • YA02_SCHPO/65-240