SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q9X1X6_THEMA/139-240, pdb ID: 1h2h. SDPsite predicts following important positions (numbering corresponds to 1h2h):

  • SDPs:

    163I, 210N

  • CPs:

    160P, 150G, 164N, 187D, 162N, 218N, 219P

  • Best cluster:

    162N, 163I, 164N

  • Second best cluster:

    187D, 210N

  • Mapping predictions onto structure of 1h2h:

  • Associated grouping:

    • Group 1

      • Q8L190_9NOCA/162-264
      • Q8TZ45_METKA/158-260
      • Q6LZ92_METMP/165-265
      • Y915_METJA/165-265
    • Group 2

      • Q6SGJ6_9BACT/173-275
      • Q7W1T9_BORPA/174-274
      • Q6FDH0_ACIAD/161-263
      • Q8XRV9_RALSO/166-268
      • Q9HYA4_PSEAE/165-267
    • Group 3

      • O28440_ARCFU/137-236
      • Q8PV99_METMA/113-215
      • Q7WLJ8_BORBR/164-266
      • Q89FY1_BRAJA/177-278
      • Q7WE57_BORBR/169-270