SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q8U2H2_PYRFU/1-165, pdb ID: 1yem. SDPsite predicts following important positions (numbering corresponds to 1yem):

  • SDPs:

    123F

  • CPs:

    35Y, 6K, 4E, 2E, 60K, 115N, 125D

  • Best cluster:

    2E, 4E, 6K, 60K, 115N, 123F, 125D

  • Second best cluster:

  • Mapping predictions onto structure of 1yem:

  • Associated grouping:

    • Group 1

      • Q9SIY3_ARATH/1-208
      • Q8Y8D9_LISMO/4-192
      • O31609_BACSU/4-189
      • Q9K901_BACHD/4-192
      • Q9FBV9_STRCO/159-307
      • Q8NXC9_STAAW/4-192
      • THTPA_MOUSE/4-197
      • THTPA_BOVIN/4-184
      • Q97QV2_STRPN/3-189
      • Q9JSR0_NEIMA/2-148
      • Q98DQ9_RHILO/2-149
      • Q8TND8_METAC/1-206
      • Q8K7J3_STRP3/3-189
      • Q9CIJ7_LACLA/4-195
      • Q8U7F6_AGRT5/2-149
      • Q92LX7_RHIME/2-149
      • Y2226_MYCTU/11-218
      • Q8PX45_METMA/1-206
      • Q8TUI3_METAC/18-224
      • Q8YN76_ANASP/2-147
      • Q55960_SYNY3/2-148
      • Q8PMU5_XANAC/2-155
      • Q9PAY8_XYLFA/2-155
      • Q982E5_RHILO/18-211
      • Q9A2N4_CAUCR/20-210
      • Q9RK66_STRCO/5-203
      • Q8NNH2_CORGL/8-210
      • Q8XVE5_RALSO/2-218
      • Q9HTY1_PSEAE/2-207
      • Q9KPD2_VIBCH/2-203
      • YGIF_HAEIN/6-203
      • Q9CP17_PASMU/2-201
      • Q8Z3N0_SALTI/2-202
      • Q8ZI62_YERPE/2-202
    • Group 2

      • O51665_BORBU/1-171
      • Q8XZK6_RALSO/2-169
      • O69199_AERHY/9-180
      • Q8ZGU9_YERPE/8-179
      • Q8ZYD0_PYRAE/1-170
      • Q8U2H2_PYRFU/1-165
      • Q20034_CAEEL/2-174
      • Q9W3U9_DROME/10-184
      • Q9GNF0_DICDI/290-460
      • Q8XKP2_CLOPE/1-175
      • Q97LB2_CLOAB/1-175
      • O58740_PYRHO/1-165
      • Q9V028_PYRAB/1-164
      • Y240_METJA/1-175
      • O59483_PYRHO/1-176
      • Q9C664_ARATH/248-410
      • Q975X8_SULTO/3-174
      • Q980N7_SULSO/1-173
      • Q8S3R9_ORYSA/242-404
      • Q9C9B9_ARATH/248-410
      • O28291_ARCFU/1-167
      • Q8TX10_METKA/1-178
      • O27666_METTH/1-174
      • Q8TIU7_METAC/1-173
      • Q9HQ74_HALN1/1-201