SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: Q9HIA7_THEAC/1-162, pdb ID: 1nog. SDPsite predicts following important positions (numbering corresponds to 1nog):

  • SDPs:

    124R, 127R, 34E, 145Y, 116H, 40G, 154F, 157A, 4R, 29Q, 125L, 118A, 2F, 108G, 104V, 18R, 63F, 106P, 87E, 1M, 67E, 97I, 161N, 102L, 107G, 14A, 158L

  • CPs:

    147N, 33D, 103F, 21K, 123R, 126E, 148R, 154F, 30G, 116H

  • Best cluster:

    106P, 107G, 108G, 157A, 158L, 161N

  • Second best cluster:

    29Q, 30G, 33D, 34E, 63F, 67E, 118A, 123R, 124R, 125L, 126E, 127R, 145Y

  • Mapping predictions onto structure of 1nog:

  • Associated grouping:

    • Group 1

      • EUTT_SALTY/93-250
      • Q8XLY6_CLOPE/105-266
      • Q92CM6_LISIN/86-246
    • Group 2

      • Q92CJ9_LISIN/3-167
      • Q9UWZ1_SULSO/1-159
      • Q970Z7_SULTO/1-162
      • Q97CK4_THEVO/14-175
      • Q9HIA7_THEAC/1-162
      • O34899_BACSU/3-169
      • Q9KCH6_BACHD/3-170
      • Q18218_CAEEL/134-310
      • MMAB_HUMAN/58-229
      • Q92CP3_LISIN/3-169
      • Q8Z5L4_SALTI/3-169
      • Q8R5W1_FUSNN/12-179
      • O58404_PYRHO/3-162
      • Q9UYY2_PYRAB/3-162
      • Q96YJ2_SULTO/2-159
      • Q980D7_SULSO/4-161
      • Q9YFT4_AERPE/12-180
      • Q9RTW5_DEIRA/3-170
      • O30452_CLOPA/3-169
      • Q9HW07_PSEAE/8-176
      • Q8XLV6_CLOPE/3-169
      • Q8PCD8_XANCP/8-169
      • Q8XW12_RALSO/8-168
      • Q8NML4_CORGL/8-178
      • Q9AQC5_RHOSH/7-176
      • YDHW_CITFR/4-170
      • Q48424_KLEPN/4-170
      • Y1149_MYCLE/8-181
      • Q9K4D0_STRCO/7-177
      • Q9AA77_CAUCR/7-178
      • Q92MH6_RHIME/7-178
      • Q8U9Y2_AGRT5/7-178
      • Q98G53_RHILO/7-179
      • Q8YJJ1_BRUME/21-195