SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: O28191_ARCFU/112-261, pdb ID: 1nt2. SDPsite predicts following important positions (numbering corresponds to 1nt2):

  • SDPs:

    181S, 228G, 188A

  • CPs:

    151P, 158G, 170G, 187G, 211G

  • Best cluster:

    187G, 188A

  • Second best cluster:

    181S, 211G, 228G

  • Mapping predictions onto structure of 1nt2:

  • Associated grouping:

    • Group 1

      • O28191_ARCFU/112-261
      • O45012_CAEEL/251-400
      • SIK1_YEAST/270-418
      • O53135_METMA/3-147
      • NOP58_YEAST/254-404
      • NO56_HUMAN/263-411
      • YZVL_CAEEL/269-417
      • Y694_METJA/217-361
      • O70396_MOUSE/190-338
      • O27282_METTH/210-354
      • O57810_PYRHO/226-371
      • Y412_ARATH/251-399
      • Y413_ARATH/208-356
    • Group 2

      • PRP31_YEAST/196-347
      • O80740_ARATH/213-361
      • PRP31_SCHPO/210-358