SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: DEOC_AQUAE/3-199, pdb ID: 1mzh. SDPsite predicts following important positions (numbering corresponds to 1mzh):

  • SDPs:

    225E, 186E, 162F, 253T, 285R, 172K, 111A, 163P, 190V, 188D, 221K, 197K, 226T, 161G, 141P, 159V, 222V, 224V, 229L, 204V, 107Y, 175E

  • CPs:

    109D, 282G, 250K, 259G, 247D, 183G

  • Best cluster:

    159V, 161G, 162F, 163P, 172K, 175E, 188D, 190V, 221K, 222V, 224V, 225E, 226T, 253T

  • Second best cluster:

    107Y, 109D, 111A, 186E

  • Mapping predictions onto structure of 1mzh:

  • Associated grouping:

    • Group 1

      • Y230_ARCFU/20-239
      • Q8PYY5_METMA/39-291
      • Q8X7H3_ECO57/92-364
      • Q8YQT4_ANASP/74-350
      • Y579_METTH/19-247
      • Y400_METJA/27-255
      • Y108_ARCFU/21-248
      • Y1554_AQUAE/20-248
    • Group 2

      • DEOC_MYCTU/9-209
      • DEOC_ECOLI/10-221
      • DEOC_CAEEL/60-276
      • DEOC_BACSU/2-201
      • DEOC_SYNY3/8-204
      • DEOC_METTH/11-209
      • DEOC_HAEIN/5-202
      • DEOC_AQUAE/3-199
      • DEOC_TREPA/2-202
      • DEOC_MYCHO/3-201
      • DEOC_MYCGE/4-201
      • DEOC_MYCPI/2-202