SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: YRBA_ECOLI/1-75, pdb ID: 1ny8. SDPsite predicts following important positions (numbering corresponds to 1ny8):

  • SDPs:

    61Y, 22Q, 30G, 6M, 7E, 13S, 23E

  • CPs:

    68H, 42F, 33F, 44G, 51Q, 58L, 54V, 38V, 69A

  • Best cluster:

    61Y, 7E, 22Q, 23E

  • Second best cluster:

    30G, 33F, 68H, 69A

  • Mapping predictions onto structure of 1ny8:

  • Associated grouping:

    • Group 1

      • BOLA_HAEIN/10-85
      • YCB1_PSEDE/10-90
      • BOLA_VIBAL/9-84
      • UVI31_SCHPO/18-101
      • O65584_ARATH/288-371
      • BOLA_ECOLI/10-85
      • YN1I_CAEEL/16-91
    • Group 2

      • Y3122_SYNY3/2-78
      • YRPM_ACIGB/1-75
      • YRBA_ECOLI/1-75
      • Y1082_HAEIN/1-75