SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: ICLR_ECOLI/82-269, pdb ID: 1td5. SDPsite predicts following important positions (numbering corresponds to 1td5):

  • SDPs:

    490.8522931204690531, 490.5192049228776532, 490.7678803885205184, 490.8871583749292, 490.5947636826400967, 490.9192922022767134, 490.7063007465179629, 490.8441464753815269, 490.5221800184186335, 490.6073286975751043, 491.000862906959168, 490.3974598418748484, 490.5772181729228035, 490.6735509613386608, 490.3453046179819006, 490.7788311786341234, 490.2473792503963841, 490.21045453192768804, 490.7689315493427735, 490.5309960465776027, 490.634592877584919, 490.602852042671702, 490.502903115526902, 490.4313399261351668, 490.4332175676632589, 490.8220899578213903, 490.24334427690988414, 490.16561288603117919, 490.12441267915807952, 490.36263838116576363, 490.4796770145328755, 490.6665812759381499, 490.5124776780595698, 490.40725619007435154, 490.5796490537323837, 490.7541937867964403, 490.3679238371356468, 490.5903042661458715, 490.4540773189835424

  • CPs:

  • Best cluster:

  • Second best cluster:

  • Mapping predictions onto structure of 1td5:

  • Associated grouping:

    • Group 1

      • ICLR_ECOLI/82-269
      • ALLR_ECOLI/79-264
      • YAGI_ECOLI/62-247
      • KDGR_ECOLI/70-255
      • KIPR_BACSU/61-246
      • O66964_AQUAE/67-252
      • YIAJ_ECOLI/81-269
      • YIAJ_HAEIN/73-262
      • YJHI_ECOLI/62-248
      • YFAX_ECOLI/63-248
    • Group 2

      • O24845_ACIAD/80-268
      • PCAR_PSEPU/101-288
      • PCAU_ACIAD/87-277
      • POBR_ACIAD/79-270
      • O67983_RHOOP/73-259
      • O33539_RHOOP/65-251
    • Group 3

      • O53238_MYCTU/62-232
      • GYLR_STRGR/63-248
      • GYLR_STRCO/63-248
    • Group 4

      • P70766_NOCSI/84-269
      • P71977_MYCTU/71-255
      • O06806_MYCTU/73-247