SDPsite: prediction of protein active and specific recognition sites from sequence and structure

Home & Submit job
Algorithm & 
Format requirements
Contact us
Gallery of examples

##FAMILY##

This family contains a protein with resolved 3D structure: O28085_ARCFU/2-93, pdb ID: 1oi0. SDPsite predicts following important positions (numbering corresponds to 1oi0):

  • SDPs:

    25E

  • CPs:

    32G, 68T, 67G, 28A

  • Best cluster:

    67G, 68T

  • Second best cluster:

    25E, 28A

  • Mapping predictions onto structure of 1oi0:

  • Associated grouping:

    • Group 1

      • O01974_CAEEL/10-139
      • IF33_HUMAN/34-146
      • PSD7_ARATH/12-125
      • Q18967_CAEEL/2-117
      • CSN6_HUMAN/36-148
      • IF35_HUMAN/87-196
      • CSN6B_ARATH/6-136
      • O82466_ORYSA/51-165
      • PSD7_DROME/5-120
      • O61792_CAEEL/36-151
      • RPN8_SCHPO/12-125
      • IF35_ARATH/23-133
      • O43060_SCHPO/18-129
      • RPN8_YEAST/2-115
      • O13386_TRIRE/11-125
    • Group 2

      • YPT5_CAEEL/24-137
      • CSN5_SCHPO/30-144
      • C61A_MOUSE/7-148
      • C61A_HUMAN/7-148
      • O00850_DICDI/26-139
      • CSN5B_ARATH/54-168
      • O75965_HUMAN/2099-2205
      • RPN11_SCHPO/25-138
      • O16155_SCHMA/21-128
      • Q12468_YEAST/81-205
      • CSN5_CAEEL/51-165
      • Y1369_MYCBO/6-114
      • P73582_SYNY3/2-121
      • O67597_AQUAE/2-103
      • O15731_DICDI/262-371
      • O95630_HUMAN/252-361
      • O59157_PYRHO/26-138
      • O27052_METTH/17-118
      • O28085_ARCFU/2-93
      • O58174_PYRHO/2-96