SDPsite: prediction of protein active and specific recognition sites from sequence and structure

Home & Submit job
Algorithm & 
Format requirements
Contact us
Gallery of examples

##FAMILY##

This family contains a protein with resolved 3D structure: YRDC_ECOLI/19-190, pdb ID: 1hru. SDPsite predicts following important positions (numbering corresponds to 1hru):

  • SDPs:

    27T, 117R, 26P, 29A, 175P, 59I, 32G, 28E, 170G, 25Y, 34G, 151V, 176S, 108T, 30V

  • CPs:

    132T, 57G, 236R, 31F, 184P, 182G, 177S, 179N

  • Best cluster:

    25Y, 26P, 27T, 28E, 29A, 30V, 31F, 32G, 117R, 170G, 175P, 176S

  • Second best cluster:

    57G, 59I, 108T, 177S, 179N

  • Mapping predictions onto structure of 1hru:

  • Associated grouping:

    • Group 1

      • HYPF_ECOLI/207-374
      • HYPF_RHILV/203-385
      • O28905_ARCFU/196-366
      • Q60190_METMA/210-386
      • O24889_HELPY/219-393
      • HYPF_SYNY3/207-383
      • HYF2_ALCEU/220-401
      • HYPF_AZOVI/212-403
      • HYPF_RHOCA/200-371
    • Group 2

      • O27727_METTH/20-193
      • Y062_METJA/26-197
      • O29477_ARCFU/17-190
      • SUA5_YEAST/57-250
      • YWLC_BACSU/26-203
      • P74144_SYNY3/11-193
      • P72724_SYNY3/22-200
      • YRDC_ECOLI/19-190
      • Y656_HAEIN/8-183
      • Y1198_HAEIN/22-199
      • YCIO_ECOLI/22-198