SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: YXKO_BACSU/30-270, pdb ID: 1kyh. SDPsite predicts following important positions (numbering corresponds to 1kyh):

  • SDPs:

    34A, 97R, 57K, 43A, 98A, 134K, 233K, 267I, 248E, 143P, 44L, 208A, 140R, 100A, 33L, 268L, 127L, 200W, 141E, 203P, 214T, 45L, 259L, 244G, 190T, 72P, 55L, 255S, 193A, 76E, 168R, 209L, 209L, 123C, 79Y, 243H, 106P, 124P, 239A, 91Q, 121A, 212G, 30A, 77A, 115V, 175W, 197G, 238N, 270R, 64E, 223L, 40P, 120T

  • CPs:

    148P, 35G, 41G, 102G, 104G, 128D, 213G, 215G, 216D

  • Best cluster:

    33L, 34A, 35G, 40P, 41G, 43A, 44L, 45L, 102G, 104G, 128D, 212G, 213G, 214T, 215G, 216D

  • Second best cluster:

    97R, 98A, 120T, 121A, 123C, 124P, 140R, 141E

  • Mapping predictions onto structure of 1kyh:

  • Associated grouping:

    • Group 1

      • Y1586_METJA/255-485
      • YKP1_YEAST/35-305
      • YNH2_CAEEL/23-286
      • YFOL_STRTR/27-271
      • YJEF_ECOLI/257-496
    • Group 2

      • Y1363_HELPY/238-466
      • YXKO_BACSU/30-270
      • Y3433_MYCTU/233-465
      • Y1433_SYNY3/254-503